JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCRT2_chr20_656596_680802	0/0	t0016	2280	4	0	0	4	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0017	2277	3	3	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0018	2280	3	0	0	3	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0019	2277	2	2	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0020	2277	2	0	0	2	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0021	2277	1	1	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0022	2277	1	0	0	1	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0023	2277	1	1	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0024	2277	1	0	0	0	1	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0025	2277	1	1	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0026	2299	1	1	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0027	2277	1	0	0	0	0	1	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0028	2280	1	1	0	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0029	2280	1	0	0	1	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0030	2280	1	0	1	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0031	2280	1	0	0	0	1	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0032	2280	1	0	0	0	0	1	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0033	2280	1	0	1	0	0	0	copy fasta	SCRT2	chr20	656596	680802
SCRT2_chr20_656596_680802	0/0	t0034	2280	1	0	0	1	0	0	copy fasta	SCRT2	chr20	656596	680802
SCTR_chr2_119434843_119529483	0/0	t0001	532	92	38	15	30	0	9	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	t0002	532	91	20	23	32	5	11	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	t0003	532	47	5	15	15	4	8	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	1/1	t0004	532	46	16	6	12	1	9	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	t0005	532	7	6	1	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	t0006	532	3	0	1	2	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	t0007	532	2	0	1	1	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	t0008	532	1	0	0	0	0	1	copy fasta	SCTR	chr2	119434843	119529483
SCTR_chr2_119434843_119529483	0/0	t0009	532	1	1	0	0	0	0	copy fasta	SCTR	chr2	119434843	119529483
SCT_chr11_621309_632181	0/1	t0001	161	409	96	80	168	16	48	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	t0002	161	1	1	0	0	0	0	copy fasta	SCT	chr11	621309	632181
SCT_chr11_621309_632181	0/0	t0003	192	1	1	0	0	0	0	copy fasta	SCT	chr11	621309	632181
SCUBE1_chr22_43192280_43348372	1/0	t0001	6829	70	2	16	34	5	12	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/1	t0002	6862	28	3	2	21	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0003	6864	25	1	19	0	1	4	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0004	6863	11	3	0	4	0	4	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0005	6829	10	10	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0006	6863	7	3	2	0	1	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0007	6829	7	0	0	7	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0008	6835	7	4	3	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0009	6228	5	2	1	0	0	2	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0010	6864	4	0	2	0	1	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0011	6863	3	0	1	0	1	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0012	6829	3	2	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0013	6862	3	0	0	3	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0014	6863	3	3	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0015	6863	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0016	6863	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0017	6829	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0018	6862	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0019	6846	2	0	2	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372