JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCUBE1_chr22_43192280_43348372	0/0	t0020	6233	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0021	6829	2	0	2	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0022	6828	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0023	6829	2	0	0	2	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0024	6861	2	0	0	2	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0025	6829	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0026	6864	2	2	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0027	6863	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0028	6829	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0029	6862	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0030	6864	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0031	6829	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0032	6861	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0033	6864	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0034	6864	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0035	6862	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0036	6863	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0037	6862	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0038	6863	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0039	6859	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0040	6864	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0041	6863	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0042	6830	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0043	6968	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0044	6914	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0045	6828	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0046	6828	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0047	6829	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0048	6829	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0049	6829	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0050	6829	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0051	6829	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0052	6829	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0053	6829	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0054	6830	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0055	6864	1	0	0	0	1	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0056	6862	1	0	0	0	0	1	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0057	6862	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0058	6829	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0059	6862	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0060	6862	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0061	6863	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0062	6862	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0063	6864	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0064	6864	1	0	0	0	1	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0065	6864	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0066	6864	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0067	6830	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0068	6862	1	0	0	0	1	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0069	6863	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372