JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCUBE1_chr22_43192280_43348372	0/0	t0070	6830	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0071	6863	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0072	6863	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0073	6864	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0074	6864	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0075	6864	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0076	6864	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0077	6863	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0078	6863	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0079	6863	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0080	6857	1	0	1	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0081	6864	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0082	6863	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0083	6847	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0084	6848	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0085	6872	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0086	6871	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0087	6236	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0088	6871	1	0	0	1	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0089	6837	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0090	6837	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0091	6872	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0092	6872	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0093	6871	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0094	6855	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0095	6837	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE1_chr22_43192280_43348372	0/0	t0096	6869	1	1	0	0	0	0	copy fasta	SCUBE1	chr22	43192280	43348372
SCUBE2_chr11_9014476_9096599	0/0	t0001	1641	56	22	6	24	0	4	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/1	t0002	1642	50	3	18	19	3	6	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0003	1642	38	0	6	26	3	3	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0004	1641	37	5	5	24	1	2	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0005	1641	32	9	15	0	3	5	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0006	1641	25	12	0	7	0	6	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0007	1644	20	0	4	11	2	3	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	1/0	t0008	1641	19	5	7	0	1	5	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0009	1644	18	5	0	11	0	2	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0010	1641	16	12	3	1	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0011	1641	13	0	1	9	1	2	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0012	1641	9	1	0	8	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0013	1643	3	3	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0014	1642	3	3	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0015	1641	3	2	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0016	1641	3	3	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0017	1641	2	2	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0018	1641	2	0	0	2	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0019	1641	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0020	1643	1	0	0	0	0	1	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0021	1641	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0022	1643	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0023	1641	1	0	0	1	0	0	copy fasta	SCUBE2	chr11	9014476	9096599