JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCUBE2_chr11_9014476_9096599	0/0	t0024	1641	1	1	0	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0025	1643	1	0	0	1	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0026	1641	1	0	0	0	0	1	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE2_chr11_9014476_9096599	0/0	t0027	1641	1	0	1	0	0	0	copy fasta	SCUBE2	chr11	9014476	9096599
SCUBE3_chr6_35208956_35258079	0/0	t0001	4832	63	11	15	22	3	12	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0002	4836	54	1	4	46	1	2	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	1/1	t0003	4838	33	16	10	0	2	3	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0004	4832	25	1	6	14	1	3	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0005	4832	12	1	6	5	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0006	4836	11	11	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0007	4836	9	7	2	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0008	4833	6	1	1	4	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0009	4837	5	4	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0010	4841	5	2	1	0	0	2	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0011	4832	5	0	0	4	0	1	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0012	4838	4	4	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0013	4832	3	0	0	3	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0014	4836	3	3	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0015	4836	3	0	0	3	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0016	4832	3	3	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0017	4847	2	0	0	2	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0018	4837	2	1	1	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0019	4837	2	0	2	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0020	4837	2	1	0	0	1	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0021	4833	2	0	0	2	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0022	4836	2	2	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0023	4832	2	0	1	0	0	1	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0024	4832	2	0	0	0	0	2	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0025	4836	2	0	2	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0026	4837	2	1	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0027	4835	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0028	4838	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0029	4838	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0030	4835	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0031	4836	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0032	4838	1	0	0	0	0	1	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0033	4838	1	0	1	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0034	4836	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0035	4838	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0036	4836	1	0	1	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0037	4838	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0038	4843	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0039	4832	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0040	4832	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0041	4837	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0042	4837	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0043	4833	1	0	0	0	0	1	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0044	4835	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0045	4832	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0046	4837	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079