Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BANP_chr16_87946434_88082316	0/0	t0015	847	1	1	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0016	887	1	0	1	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0017	847	1	1	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0018	847	1	1	0	0	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0019	846	1	0	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	t0020	886	1	0	0	1	0	0	copy fasta	BANP	chr16	87946434	88082316
BAP1_chr3_52396008_52415008	1/1	t0001	1411	315	77	55	140	9	32	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0002	1411	11	8	2	0	0	1	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0003	1411	7	0	4	2	1	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0004	1411	3	0	0	3	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0005	1411	3	0	0	0	0	3	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0006	1411	3	2	1	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0007	1411	3	3	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0008	1411	1	1	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0009	1411	1	1	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	t0010	1411	1	0	0	1	0	0	copy fasta	BAP1	chr3	52396008	52415008
BARD1_chr2_214720646_214814683	0/1	t0001	3147	70	9	14	34	0	12	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0002	3146	47	1	10	28	2	6	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0003	3141	37	1	4	23	2	7	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0004	3146	19	9	1	7	1	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0005	3145	17	0	2	15	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0006	3145	17	0	4	10	0	3	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0007	3141	13	0	2	10	1	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0008	3148	11	2	7	0	1	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0009	3147	10	10	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0010	3147	7	0	5	1	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0011	3148	6	1	0	5	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0012	3145	5	5	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0013	3145	5	4	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0014	3149	4	4	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0015	3145	4	3	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0016	3145	4	0	3	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0017	3148	4	3	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0018	3147	4	4	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0019	3142	4	0	3	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0020	3083	3	3	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0021	3146	3	3	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0022	3141	3	0	3	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0023	3147	3	3	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0024	3147	3	1	1	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0025	3145	3	3	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0026	3147	2	0	0	2	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0027	3150	2	2	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0028	3145	2	0	0	2	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0029	3146	2	0	0	1	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0030	3147	2	0	2	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0031	3145	2	0	0	2	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0032	3084	2	2	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0033	3147	2	0	0	0	0	2	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0034	3147	2	1	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683