JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDC1_chr2_20195797_20230130	0/0	t0016	2231	2	2	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0017	2232	2	2	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0018	2233	2	2	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0019	2233	1	0	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0020	2232	1	1	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0021	2233	1	1	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0022	2233	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0023	2232	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0024	2233	1	0	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0025	2233	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0026	2232	1	0	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0027	2232	1	1	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0028	2231	1	1	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0029	2231	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0030	2232	1	0	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0031	2232	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0032	2232	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0033	2232	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0034	2232	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0035	2233	1	1	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0036	2233	1	0	0	0	1	0	copy fasta	SDC1	chr2	20195797	20230130
SDC2_chr8_96488813_96616790	1/0	t0001	2702	143	40	22	64	5	11	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0002	2702	71	31	16	15	2	7	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0003	2702	62	4	10	44	1	3	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/1	t0004	2702	16	1	3	8	2	1	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0005	2702	15	0	3	9	1	2	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0006	2702	10	1	2	2	1	4	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0007	2701	3	3	0	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0008	2702	2	2	0	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0009	2702	2	2	0	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0010	2702	1	1	0	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0011	2702	1	1	0	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0012	2702	1	0	1	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0013	2702	1	0	0	0	0	1	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0014	2702	1	0	1	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0015	2702	1	0	1	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0016	2702	1	1	0	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0017	2702	1	0	1	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0018	2702	1	0	0	0	0	1	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	t0019	2702	1	1	0	0	0	0	copy fasta	SDC2	chr8	96488813	96616790
SDC3_chr1_30864466_30913758	0/0	t0001	3917	74	1	10	58	0	5	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0002	3916	50	3	17	22	3	5	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0003	3917	27	0	5	20	0	2	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/1	t0004	3919	26	8	10	3	1	3	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0005	3916	20	0	2	15	0	3	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	1/0	t0006	3918	17	5	5	2	0	4	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0007	3916	16	0	7	0	4	5	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0008	3916	13	13	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0009	3919	11	10	1	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0010	3917	9	0	4	1	0	4	copy fasta	SDC3	chr1	30864466	30913758