JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDC3_chr1_30864466_30913758	0/0	t0011	3919	8	3	3	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0012	3917	7	0	0	7	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0013	3917	7	0	0	3	1	3	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0014	3919	4	4	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0015	3917	4	2	0	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0016	3918	4	0	1	1	2	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0017	3923	3	3	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0018	3918	3	2	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0019	3920	3	0	1	0	0	2	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0020	3916	3	0	1	0	2	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0021	3916	3	3	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0022	3919	3	0	1	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0023	3917	2	0	0	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0024	3919	2	0	0	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0025	3920	2	2	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0026	3917	2	0	2	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0027	3916	2	1	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0028	3916	2	0	0	0	0	2	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0029	3916	2	2	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0030	3919	2	2	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0031	3909	2	2	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0032	3916	1	0	1	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0033	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0034	3924	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0035	3923	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0036	3917	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0037	3917	1	0	0	0	1	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0038	3918	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0039	3917	1	0	1	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0040	3919	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0041	3919	1	0	1	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0042	3917	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0043	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0044	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0045	3916	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0046	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0047	3917	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0048	3917	1	0	1	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0049	3916	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0050	3916	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0051	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0052	3916	1	0	1	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0053	3919	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0054	3919	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0055	3920	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0056	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0057	3918	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0058	3917	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0059	3919	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0060	3919	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758