JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDC3_chr1_30864466_30913758	0/0	t0061	3917	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0062	3917	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0063	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0064	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0065	3918	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0066	3917	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0067	3917	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0068	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0069	3917	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0070	3916	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0071	3912	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0072	3909	1	0	1	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0073	3918	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0074	3917	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0075	3917	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0076	3919	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0077	3920	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0078	3919	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0079	3916	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0080	3917	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0081	3916	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0082	3917	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0083	3919	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	t0084	3917	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC4_chr20_45320288_45353424	0/0	t0001	2017	86	11	15	44	0	16	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0002	2017	43	11	6	14	5	7	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	1/1	t0003	2017	43	10	9	14	3	5	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0004	2011	41	0	0	35	2	4	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0005	2014	36	11	7	15	1	2	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0006	2013	21	1	3	16	1	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0007	2016	13	10	3	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0008	2018	13	3	5	5	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0009	2014	10	0	0	6	0	4	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0010	2016	10	1	5	3	1	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0011	2012	8	0	7	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0012	2013	8	1	0	7	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0013	2010	7	0	0	7	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0014	2020	6	4	2	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0015	2014	5	4	1	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0016	2013	5	2	0	3	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0017	2017	5	0	0	4	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0018	2017	4	0	0	4	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0019	2014	4	4	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0020	2015	4	4	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0021	2018	4	1	1	2	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0022	2012	3	0	0	3	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0023	2016	3	2	0	0	1	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0024	2018	2	1	1	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0025	2013	2	1	0	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0026	2010	2	0	0	2	0	0	copy fasta	SDC4	chr20	45320288	45353424