JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDC4_chr20_45320288_45353424	0/0	t0027	2015	2	0	1	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0028	2018	2	2	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0029	2018	2	0	0	2	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0030	2018	2	1	0	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0031	2017	1	0	1	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0032	2014	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0033	2013	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0034	2012	1	0	0	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0035	2013	1	0	1	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0036	2014	1	0	1	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0037	2011	1	0	0	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0038	2014	1	0	0	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0039	2016	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0040	2017	1	0	1	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0041	2017	1	0	0	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0042	2016	1	0	0	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0043	2017	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0044	2018	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0045	2018	1	0	0	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0046	2017	1	0	0	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0047	2017	1	0	0	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0048	2019	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0049	2018	1	0	0	1	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0050	2015	1	0	0	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0051	2019	1	0	0	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	t0052	2020	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDCBP2_chr20_1304909_1334139	0/0	t0001	607	140	13	19	86	4	18	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0002	607	124	9	19	79	3	14	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	1/0	t0003	607	61	37	17	0	0	6	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0004	607	56	13	13	15	7	8	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0005	607	18	13	2	2	0	1	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0006	607	8	0	0	7	1	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0007	607	6	6	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/1	t0008	607	6	0	3	0	1	1	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0009	612	3	0	0	3	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0010	607	2	1	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0011	607	2	2	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0012	607	1	1	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0013	607	1	1	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0014	607	1	0	0	1	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	t0015	607	1	0	0	1	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP_chr8_58548261_58587858	1/1	t0001	1177	270	52	57	114	14	31	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0002	1177	88	16	3	67	0	2	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0003	1179	6	6	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0004	1177	4	0	0	4	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0005	1177	4	3	0	0	0	1	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0006	1177	4	4	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0007	1177	3	2	1	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0008	1179	2	0	0	2	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0009	1177	2	2	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858