JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDCBP_chr8_58548261_58587858	0/0	t0010	1177	1	0	1	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0011	1177	1	0	0	1	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0012	1177	1	1	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0013	1177	1	1	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	t0014	1177	1	1	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCCAG8_chr1_243251041_243505091	0/0	t0001	440	133	66	24	22	4	17	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/1	t0002	440	54	4	17	16	2	14	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	t0003	440	1	0	1	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	t0004	440	1	0	0	0	0	1	copy fasta	SDCCAG8	chr1	243251041	243505091
SDE2_chr1_225977702_226004343	0/1	t0001	2632	208	61	25	89	11	21	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0002	2632	131	19	42	51	5	14	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0003	2627	16	0	0	14	0	2	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0004	2632	10	1	0	6	0	3	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0005	2632	9	0	0	9	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0006	2632	6	6	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0007	2632	3	3	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0008	2632	3	2	1	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0009	2632	3	0	0	3	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0010	2632	2	0	0	0	0	2	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0011	2632	2	0	1	0	0	1	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0012	2632	2	2	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0013	2632	1	0	0	1	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0014	2632	1	1	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0015	2632	1	0	1	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0016	2632	1	0	0	1	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0017	2632	1	1	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	1/0	t0018	2632	1	0	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	t0019	2632	1	0	0	0	0	1	copy fasta	SDE2	chr1	225977702	226004343
SDF2L1_chr22_21637302_21649299	1/0	t0001	160	401	78	75	186	16	45	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/1	t0002	160	23	18	3	1	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	t0003	160	4	0	2	0	2	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	t0004	160	1	0	0	0	0	1	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	t0005	148	1	0	0	1	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2_chr17_28643346_28666906	1/1	t0001	674	307	65	55	149	4	32	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	t0002	674	89	26	19	32	4	8	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	t0003	674	1	1	0	0	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	t0004	674	1	0	0	1	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF4_chr1_1211931_1237001	1/1	t0001	866	269	56	56	108	11	36	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0002	866	60	5	6	42	5	2	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0003	860	16	4	1	5	2	4	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0004	866	13	11	2	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0005	868	11	9	2	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0006	865	5	0	0	5	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0007	866	3	2	1	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0008	866	3	0	0	3	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0009	866	2	2	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0010	866	2	0	0	2	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0011	866	2	1	0	0	0	1	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0012	866	2	2	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0013	866	2	0	2	0	0	0	copy fasta	SDF4	chr1	1211931	1237001