JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDF4_chr1_1211931_1237001	0/0	t0014	866	2	0	2	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0015	867	1	0	0	1	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0016	867	1	0	0	1	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0017	867	1	0	0	1	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0018	866	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0019	860	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0020	866	1	0	0	0	0	1	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0021	866	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	t0022	868	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDHAF1_chr19_35990188_36001312	1/1	t0001	778	363	78	71	161	9	42	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	t0002	778	18	9	5	0	1	3	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	t0003	778	6	6	0	0	0	0	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	t0004	778	1	0	0	1	0	0	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	t0005	778	1	1	0	0	0	0	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	t0006	778	1	0	0	0	0	1	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	t0007	778	1	1	0	0	0	0	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF1_chr19_35990188_36001312	0/0	t0008	778	1	1	0	0	0	0	copy fasta	SDHAF1	chr19	35990188	36001312
SDHAF2_chr11_61425124_61451733	0/1	t0001	686	139	17	34	58	6	23	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF2_chr11_61425124_61451733	1/0	t0002	686	41	22	7	4	2	5	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF2_chr11_61425124_61451733	0/0	t0003	686	36	31	4	0	0	1	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF2_chr11_61425124_61451733	0/0	t0004	686	10	10	0	0	0	0	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF2_chr11_61425124_61451733	0/0	t0005	686	9	9	0	0	0	0	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF2_chr11_61425124_61451733	0/0	t0006	686	1	1	0	0	0	0	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF2_chr11_61425124_61451733	0/0	t0007	686	1	0	1	0	0	0	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF2_chr11_61425124_61451733	0/0	t0008	686	1	0	0	0	0	1	copy fasta	SDHAF2	chr11	61425124	61451733
SDHAF3_chr7_97112698_97186763	1/1	t0001	575	206	42	36	97	6	23	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	t0002	575	112	29	20	48	4	11	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	t0003	575	72	13	19	28	4	8	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	t0004	575	5	5	0	0	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	t0005	575	2	2	0	0	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	t0006	575	2	2	0	0	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	t0007	585	1	0	1	0	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	t0008	575	1	0	0	1	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF3_chr7_97112698_97186763	0/0	t0009	575	1	1	0	0	0	0	copy fasta	SDHAF3	chr7	97112698	97186763
SDHAF4_chr6_70561930_70594569	1/1	t0001	857	227	39	34	116	10	26	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0002	865	37	20	10	2	2	3	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0003	877	32	3	10	18	0	1	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0004	879	19	1	5	9	1	3	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0005	871	9	9	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0006	875	7	6	1	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0007	867	7	4	2	0	0	1	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0008	881	3	1	0	1	0	1	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0009	877	3	0	3	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0010	875	3	3	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0011	879	2	0	0	2	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0012	879	2	0	0	2	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0013	877	2	0	2	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0014	873	2	2	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0015	878	2	0	0	0	2	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0016	857	1	1	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569