JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDHAF4_chr6_70561930_70594569	0/0	t0017	857	1	0	1	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0018	857	1	0	0	1	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0019	878	1	0	0	1	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0020	895	1	0	1	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0021	885	1	0	0	0	0	1	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0022	883	1	0	0	0	1	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0023	883	1	1	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0024	875	1	1	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0025	875	1	1	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0026	871	1	1	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0027	865	1	0	1	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHAF4_chr6_70561930_70594569	0/0	t0028	857	1	1	0	0	0	0	copy fasta	SDHAF4	chr6	70561930	70594569
SDHA_chr5_213320_262082	1/0	t0001	699	130	8	23	79	3	16	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/1	t0002	699	103	2	14	59	6	21	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	t0003	700	18	0	12	1	3	2	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	t0004	716	7	1	3	2	0	1	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	t0005	698	4	0	1	1	0	2	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	t0006	715	3	3	0	0	0	0	copy fasta	SDHA	chr5	213320	262082
SDHA_chr5_213320_262082	0/0	t0007	667	1	0	1	0	0	0	copy fasta	SDHA	chr5	213320	262082
SDHB_chr1_17013722_17059032	1/1	t0001	173	367	94	63	164	14	30	copy fasta	SDHB	chr1	17013722	17059032
SDHB_chr1_17013722_17059032	0/0	t0002	173	1	0	1	0	0	0	copy fasta	SDHB	chr1	17013722	17059032
SDHC_chr1_161309381_161368206	1/1	t0001	799	229	59	39	87	12	30	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0002	799	60	8	4	40	0	8	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0003	799	13	0	0	11	0	2	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0004	799	9	7	2	0	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0005	799	7	7	0	0	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0006	799	6	5	1	0	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0007	799	1	1	0	0	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0008	799	1	0	0	1	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0009	799	1	1	0	0	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0010	799	1	0	0	1	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0011	799	1	0	0	1	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHC_chr1_161309381_161368206	0/0	t0012	799	1	0	0	1	0	0	copy fasta	SDHC	chr1	161309381	161368206
SDHD_chr11_112081873_112100794	0/1	t0001	860	297	33	56	163	12	32	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	1/0	t0002	860	31	25	5	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0003	860	26	23	3	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0004	860	11	0	8	3	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0005	860	10	10	0	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0006	860	4	4	0	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0007	860	3	0	3	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0008	860	2	0	2	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0009	860	1	0	0	1	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0010	860	1	0	1	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0011	860	1	0	0	1	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDHD_chr11_112081873_112100794	0/0	t0012	860	1	1	0	0	0	0	copy fasta	SDHD	chr11	112081873	112100794
SDK1_chr7_3296252_4274000	0/0	t0001	3951	11	6	1	0	1	3	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0002	3954	7	2	5	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0003	3951	7	1	4	2	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0004	3954	3	0	0	0	2	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0005	3954	3	0	1	0	0	2	copy fasta	SDK1	chr7	3296252	4274000