JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDK1_chr7_3296252_4274000	0/0	t0056	3951	1	0	0	0	0	1	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0057	3952	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0058	3952	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0059	3952	1	0	0	0	1	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0060	3952	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0061	3952	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0062	3951	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0063	3951	1	0	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0064	3951	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0065	3951	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0066	3952	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0067	3951	1	0	0	1	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0068	3951	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0069	3948	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0070	3948	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0071	3948	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0072	3948	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0073	3949	1	1	0	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK1_chr7_3296252_4274000	0/0	t0074	3948	1	0	1	0	0	0	copy fasta	SDK1	chr7	3296252	4274000
SDK2_chr17_73329384_73649445	0/0	t0001	4563	15	3	3	5	1	3	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0002	4563	13	1	2	7	0	3	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0003	4563	8	0	4	2	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0004	4567	7	2	0	3	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0005	4565	6	0	1	0	0	5	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0006	4565	5	0	2	2	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0007	4563	5	3	2	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0008	4561	5	3	0	1	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0009	4565	5	0	0	5	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0010	4561	5	2	0	2	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	1/0	t0011	4561	4	3	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0012	4561	4	0	1	2	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0013	4563	4	1	1	0	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0014	4577	4	2	1	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0015	4565	3	0	1	2	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0016	4563	3	2	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0017	4563	3	2	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0018	4563	3	2	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0019	4565	3	0	0	3	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0020	4563	3	0	2	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0021	4584	3	0	3	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0022	4567	3	3	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0023	4557	3	3	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0024	4565	2	1	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0025	4563	2	0	0	2	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0026	4566	2	0	2	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0027	4557	2	2	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0028	4565	2	0	0	0	0	2	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/1	t0029	4565	2	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0030	4563	2	1	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0031	4562	2	0	1	1	0	0	copy fasta	SDK2	chr17	73329384	73649445