Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BARD1_chr2_214720646_214814683	0/0	t0035	3146	2	0	0	2	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0036	3148	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0037	3147	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0038	3147	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0039	3147	1	0	0	0	1	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0040	3146	1	0	0	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0041	3146	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0042	3146	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0043	3146	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0044	3142	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0045	3145	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0046	3084	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0047	3085	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0048	3147	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0049	3146	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0050	3147	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0051	3148	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0052	3148	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0053	3146	1	0	0	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0054	3147	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0055	3148	1	0	0	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0056	3147	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0057	3148	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0058	3148	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0059	3141	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0060	3146	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0061	3142	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0062	3141	1	0	0	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0063	3147	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0064	3145	1	0	0	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	1/0	t0065	3145	1	0	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0066	3145	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0067	3147	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0068	3084	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0069	3147	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0070	3148	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	t0071	3144	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARHL1_chr9_132577606_132595252	0/0	t0001	923	261	58	48	122	12	21	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	1/1	t0002	923	177	9	38	96	6	26	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	t0003	923	30	30	0	0	0	0	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	t0004	935	1	0	0	1	0	0	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	t0005	923	1	0	0	0	0	1	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	t0006	923	1	1	0	0	0	0	copy fasta	BARHL1	chr9	132577606	132595252
BARHL1_chr9_132577606_132595252	0/0	t0007	923	1	0	0	1	0	0	copy fasta	BARHL1	chr9	132577606	132595252
BARHL2_chr1_90706539_90722302	1/0	t0001	881	250	59	35	128	7	20	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/1	t0002	881	182	30	36	85	9	21	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	t0003	881	7	1	3	0	2	1	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	t0004	881	4	4	0	0	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	t0005	881	1	1	0	0	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	t0006	881	1	1	0	0	0	0	copy fasta	BARHL2	chr1	90706539	90722302