JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDK2_chr17_73329384_73649445	0/0	t0032	4563	1	0	0	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0033	4567	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0034	4567	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0035	4565	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0036	4563	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0037	4580	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0038	4565	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0039	4569	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0040	4571	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0041	4569	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0042	4570	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0043	4567	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0044	4581	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0045	4584	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0046	4566	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0047	4567	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0048	4565	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0049	4564	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0050	4565	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0051	4562	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0052	4562	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0053	4568	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0054	4584	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0055	4563	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0056	4580	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0057	4561	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0058	4561	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0059	4561	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0060	4564	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0061	4575	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0062	4569	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0063	4578	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0064	4564	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0065	4564	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0066	4564	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0067	4565	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0068	4562	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0069	4562	1	0	0	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0070	4563	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0071	4563	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0072	4564	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0073	4560	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0074	4575	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0075	4556	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0076	4558	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0077	4579	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0078	4563	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0079	4563	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0080	4569	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0081	4567	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445