JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDK2_chr17_73329384_73649445	0/0	t0082	4579	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0083	4565	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0084	4562	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0085	4563	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0086	4563	1	0	0	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0087	4577	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0088	4591	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0089	4565	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0090	4570	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0091	4571	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0092	4567	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0093	4567	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0094	4567	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0095	4582	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0096	4562	1	0	0	1	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0097	4580	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0098	4580	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0099	4591	1	0	0	0	0	1	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0100	4560	1	0	0	0	1	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0101	4561	1	0	1	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDK2_chr17_73329384_73649445	0/0	t0102	4558	1	1	0	0	0	0	copy fasta	SDK2	chr17	73329384	73649445
SDR16C5_chr8_56295005_56325175	1/0	t0001	1607	299	59	65	139	6	29	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/1	t0002	1609	63	14	13	25	3	7	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0003	1608	7	6	0	1	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0004	1607	4	4	0	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0005	1607	4	0	2	0	0	2	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0006	1609	4	4	0	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0007	1608	2	0	1	0	0	1	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0008	1609	2	2	0	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0009	1607	2	2	0	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0010	1607	2	0	0	2	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0011	1607	1	0	0	1	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0012	1607	1	0	0	1	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0013	1609	1	0	1	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0014	1609	1	1	0	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0015	1609	1	0	0	0	0	1	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0016	1607	1	1	0	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0017	1607	1	0	0	0	1	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0018	1607	1	1	0	0	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR16C5_chr8_56295005_56325175	0/0	t0019	1607	1	0	0	1	0	0	copy fasta	SDR16C5	chr8	56295005	56325175
SDR39U1_chr14_24434766_24447776	0/1	t0001	325	336	33	66	182	14	40	copy fasta	SDR39U1	chr14	24434766	24447776
SDR39U1_chr14_24434766_24447776	1/0	t0002	325	126	57	10	50	2	6	copy fasta	SDR39U1	chr14	24434766	24447776
SDR42E1_chr16_81983855_82016470	0/1	t0001	10367	84	5	13	51	4	10	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0002	10367	55	4	20	17	6	8	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	1/0	t0003	10367	37	2	7	18	3	6	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0004	10368	28	0	0	26	0	2	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0005	10367	22	0	5	14	1	2	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0006	10368	8	6	2	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0007	10367	7	0	0	7	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0008	10369	7	7	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470