JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDR42E1_chr16_81983855_82016470	0/0	t0009	10369	6	5	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0010	10367	5	0	0	5	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0011	10368	4	3	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0012	10369	4	0	0	4	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0013	10368	4	4	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0014	10368	3	3	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0015	10367	3	3	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0016	10368	3	3	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0017	10367	3	3	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0018	10367	3	0	2	0	1	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0019	10367	3	0	3	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0020	10366	3	1	2	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0021	10367	3	0	0	3	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0022	10367	3	3	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0023	10367	3	3	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0024	10367	3	0	0	3	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0025	10367	3	0	0	3	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0026	10367	3	0	0	0	1	2	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0027	10367	3	3	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0028	10368	3	3	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0029	10367	2	2	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0030	10367	2	2	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0031	10368	2	2	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0032	10367	2	0	2	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0033	10369	2	0	0	2	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0034	10367	2	0	2	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0035	10367	2	0	0	0	0	2	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0036	10367	2	0	2	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0037	10366	2	0	0	2	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0038	10367	2	2	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0039	10369	2	0	2	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0040	10367	2	0	1	0	1	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0041	10367	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0042	10370	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0043	10366	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0044	10367	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0045	10367	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0046	10366	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0047	10368	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0048	10368	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0049	10367	1	0	0	0	0	1	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0050	10367	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0051	10369	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0052	10367	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0053	10367	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0054	10368	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0055	10366	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0056	10368	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0057	10366	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0058	10369	1	0	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470