JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SDR42E1_chr16_81983855_82016470	0/0	t0109	10368	1	0	0	1	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0110	10367	1	0	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0111	10369	1	0	0	0	0	1	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0112	10369	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0113	10370	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0114	10370	1	0	1	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0115	10368	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0116	10370	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0117	10367	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0118	10369	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0119	10367	1	1	0	0	0	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E1_chr16_81983855_82016470	0/0	t0120	10367	1	0	0	0	1	0	copy fasta	SDR42E1	chr16	81983855	82016470
SDR42E2_chr16_22157506_22196751	0/1	t0001	1454	315	67	57	150	5	35	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0002	1454	15	7	2	0	1	5	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0003	1454	4	4	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	1/0	t0004	1454	4	1	2	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0005	1454	3	2	1	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0006	1454	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0007	1454	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0008	1454	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0009	1454	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0010	1454	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0011	1454	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0012	1454	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0013	1454	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0014	1454	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0015	1454	1	0	0	1	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0016	1454	1	0	1	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0017	1454	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0018	1454	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0019	1454	1	0	1	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR42E2_chr16_22157506_22196751	0/0	t0020	1454	1	1	0	0	0	0	copy fasta	SDR42E2	chr16	22157506	22196751
SDR9C7_chr12_56918133_56939408	1/1	t0001	848	307	48	52	165	11	29	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	t0002	848	116	44	17	43	5	7	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	t0003	848	3	0	0	3	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	t0004	848	2	2	0	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	t0005	848	1	0	1	0	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDR9C7_chr12_56918133_56939408	0/0	t0006	837	1	0	0	1	0	0	copy fasta	SDR9C7	chr12	56918133	56939408
SDSL_chr12_113417380_113443276	1/1	t0001	317	294	86	69	95	16	26	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	t0002	317	3	2	1	0	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDSL_chr12_113417380_113443276	0/0	t0003	317	1	0	0	1	0	0	copy fasta	SDSL	chr12	113417380	113443276
SDS_chr12_113387445_113408887	1/1	t0001	619	279	80	60	96	13	28	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	t0002	619	48	0	4	31	5	8	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	t0003	619	6	5	1	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	t0004	619	5	0	0	5	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	t0005	619	2	0	2	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	t0006	619	1	0	1	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	t0007	619	1	1	0	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	t0008	619	1	1	0	0	0	0	copy fasta	SDS	chr12	113387445	113408887
SDS_chr12_113387445_113408887	0/0	t0009	619	1	1	0	0	0	0	copy fasta	SDS	chr12	113387445	113408887