JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEBOX_chr17_28358506_28370199	1/1	t0001	811	375	89	80	142	16	46	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	t0002	811	3	0	0	3	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	t0003	811	2	2	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	t0004	811	2	2	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	t0005	811	1	0	1	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	t0006	811	1	1	0	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	t0007	811	1	0	1	0	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEBOX_chr17_28358506_28370199	0/0	t0008	811	1	0	0	1	0	0	copy fasta	SEBOX	chr17	28358506	28370199
SEC11A_chr15_84664544_84721139	1/1	t0001	540	304	81	65	112	12	32	copy fasta	SEC11A	chr15	84664544	84721139
SEC11A_chr15_84664544_84721139	0/0	t0002	540	10	10	0	0	0	0	copy fasta	SEC11A	chr15	84664544	84721139
SEC11A_chr15_84664544_84721139	0/0	t0003	540	3	0	1	2	0	0	copy fasta	SEC11A	chr15	84664544	84721139
SEC11A_chr15_84664544_84721139	0/0	t0004	540	2	0	0	0	0	2	copy fasta	SEC11A	chr15	84664544	84721139
SEC11A_chr15_84664544_84721139	0/0	t0005	540	1	1	0	0	0	0	copy fasta	SEC11A	chr15	84664544	84721139
SEC11C_chr18_59134884_59163832	1/1	t0001	213	438	98	76	213	8	41	copy fasta	SEC11C	chr18	59134884	59163832
SEC11C_chr18_59134884_59163832	0/0	t0002	213	5	0	0	5	0	0	copy fasta	SEC11C	chr18	59134884	59163832
SEC11C_chr18_59134884_59163832	0/0	t0003	213	1	0	0	0	0	1	copy fasta	SEC11C	chr18	59134884	59163832
SEC13_chr3_10295931_10326112	0/1	t0001	391	317	71	45	156	7	37	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	1/0	t0002	391	60	23	17	3	3	13	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	t0003	391	1	1	0	0	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	t0004	391	1	1	0	0	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC13_chr3_10295931_10326112	0/0	t0005	391	1	0	0	1	0	0	copy fasta	SEC13	chr3	10295931	10326112
SEC14L1_chr17_77135969_77222101	0/0	t0001	3271	52	7	11	25	1	8	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0002	3418	49	5	2	41	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/1	t0003	3301	47	14	3	25	1	3	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0004	3353	43	1	10	21	3	8	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0005	3353	41	10	6	14	3	8	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0006	2810	36	3	11	18	0	4	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0007	3288	20	7	11	0	1	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0008	3314	16	0	0	13	0	3	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0009	3236	7	6	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0010	3259	6	0	5	0	1	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0011	3353	6	0	0	6	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0012	3340	5	5	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	1/0	t0013	3353	5	4	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0014	3327	4	1	1	0	2	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0015	3141	4	4	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0016	3418	3	0	0	3	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0017	3288	3	3	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0018	3340	3	0	0	3	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0019	3223	3	3	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0020	3258	3	0	0	0	0	3	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0021	3353	3	0	0	3	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0022	3377	3	0	0	0	0	3	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0023	3271	2	0	0	2	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0024	3353	2	1	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0025	3275	2	0	0	1	1	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0026	3288	2	0	1	0	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0027	3353	2	0	1	0	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0028	3340	2	0	0	1	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0029	3275	2	0	0	2	0	0	copy fasta	SEC14L1	chr17	77135969	77222101