JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC14L1_chr17_77135969_77222101	0/0	t0030	3418	2	0	0	2	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0031	3405	2	0	0	2	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0032	3288	2	1	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0033	3245	2	0	0	2	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0034	3310	2	0	0	2	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0035	3258	2	0	2	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0036	3145	2	2	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0037	3145	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0038	3271	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0039	3327	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0040	3353	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0041	3206	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0042	3353	1	0	0	0	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0043	3340	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0044	3284	1	0	0	0	1	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0045	3301	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0046	3301	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0047	3340	1	0	0	0	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0048	3353	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0049	3366	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0050	3301	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0051	3236	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0052	3340	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0053	3366	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0054	3366	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0055	3366	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0056	3395	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0057	3418	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0058	3418	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0059	3275	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0060	3236	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0061	3392	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0062	3366	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0063	2810	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0064	3327	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0065	3288	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0066	3353	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0067	3271	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0068	3271	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0069	2797	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0070	2797	1	0	0	0	0	1	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0071	3271	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0072	3353	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0073	3340	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0074	3301	1	1	0	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0075	3340	1	0	1	0	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L1_chr17_77135969_77222101	0/0	t0076	3418	1	0	0	1	0	0	copy fasta	SEC14L1	chr17	77135969	77222101
SEC14L2_chr22_30392018_30430303	0/1	t0001	2996	86	2	18	48	2	15	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0002	2996	78	5	17	49	3	4	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	1/0	t0003	2996	59	11	17	18	4	8	copy fasta	SEC14L2	chr22	30392018	30430303