JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC14L2_chr22_30392018_30430303	0/0	t0004	2996	50	12	9	23	2	4	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0005	2996	42	21	8	8	3	2	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0006	2996	17	0	2	12	1	2	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0007	2996	11	11	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0008	2996	10	8	2	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0009	2996	8	0	3	0	1	4	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0010	2996	7	7	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0011	2996	6	0	0	6	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0012	2996	5	0	0	5	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0013	2996	5	5	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0014	2996	5	0	0	4	0	1	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0015	2996	3	0	0	3	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0016	2996	2	0	0	2	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0017	2996	2	0	0	0	1	1	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0018	2996	2	2	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0019	2996	2	0	0	2	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0020	2996	2	1	1	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0021	2996	2	2	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0022	2996	2	2	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0023	2996	1	0	0	1	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0024	2996	1	0	1	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0025	2996	1	0	0	0	0	1	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0026	2996	1	0	0	0	0	1	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0027	2996	1	1	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0028	2996	1	1	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0029	2996	1	0	0	1	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0030	2996	1	0	1	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0031	2996	1	0	1	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0032	2996	1	1	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0033	2996	1	0	0	0	1	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0034	2996	1	1	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0035	2996	1	1	0	0	0	0	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L2_chr22_30392018_30430303	0/0	t0036	2996	1	0	0	0	0	1	copy fasta	SEC14L2	chr22	30392018	30430303
SEC14L3_chr22_30454229_30477017	1/0	t0001	852	321	75	62	131	14	38	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/1	t0002	852	105	14	16	63	3	8	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0003	852	10	0	0	10	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0004	852	5	5	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0005	852	3	3	0	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0006	852	2	0	0	0	1	1	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0007	852	2	1	1	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0008	852	2	0	1	0	0	1	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0009	852	1	0	0	1	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0010	852	1	0	1	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0011	852	1	0	1	0	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L3_chr22_30454229_30477017	0/0	t0012	852	1	0	0	1	0	0	copy fasta	SEC14L3	chr22	30454229	30477017
SEC14L4_chr22_30483902_30510695	1/1	t0001	1290	260	26	38	157	8	29	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0002	1297	48	8	24	4	6	6	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0003	1290	36	12	3	20	0	1	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0004	1294	29	13	4	0	1	11	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0005	1294	14	11	3	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695