JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC14L4_chr22_30483902_30510695	0/0	t0006	1286	14	13	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0007	1290	7	7	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0008	1298	7	1	4	0	2	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0009	1294	2	1	1	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0010	1294	2	0	0	0	1	1	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0011	1290	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0012	1294	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0013	1290	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0014	1301	1	0	0	1	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L4_chr22_30483902_30510695	0/0	t0015	1293	1	1	0	0	0	0	copy fasta	SEC14L4	chr22	30483902	30510695
SEC14L5_chr16_4953330_5024157	0/0	t0001	4355	97	4	16	53	5	19	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0002	4355	67	17	8	36	2	4	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0003	4355	63	5	25	25	4	4	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0004	4355	45	1	14	22	3	5	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0005	4355	9	8	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0006	4355	7	7	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0007	4355	6	6	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0008	4355	5	0	0	5	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0009	4355	5	5	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0010	4355	4	4	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0011	4355	3	0	0	3	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0012	4355	3	2	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0013	4355	3	3	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0014	4355	3	1	0	0	2	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0015	4355	3	0	0	3	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	1/0	t0016	4355	3	2	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0017	4365	2	2	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0018	4355	2	1	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0019	4355	2	2	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0020	4356	2	2	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0021	4356	2	2	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0022	4355	2	2	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0023	4355	2	0	0	2	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0024	4355	2	0	0	0	0	2	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0025	4355	2	2	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/1	t0026	4355	2	0	0	0	1	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0027	4355	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0028	4356	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0029	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0030	4355	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0031	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0032	4355	1	0	0	0	0	1	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0033	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0034	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0035	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0036	4355	1	0	0	0	0	1	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0037	4355	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0038	4355	1	0	0	0	0	1	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0039	4355	1	0	0	0	1	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0040	4355	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157