JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC14L5_chr16_4953330_5024157	0/0	t0041	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0042	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0043	4355	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0044	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0045	4355	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0046	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0047	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0048	4355	1	0	0	1	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0049	4355	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0050	4355	1	0	0	0	0	1	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0051	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0052	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0053	4355	1	0	1	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0054	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0055	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L5_chr16_4953330_5024157	0/0	t0056	4355	1	1	0	0	0	0	copy fasta	SEC14L5	chr16	4953330	5024157
SEC14L6_chr22_30517799_30551741	1/1	t0001	2258	243	31	45	121	6	38	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0002	2258	39	3	21	4	6	5	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0003	2258	32	9	1	21	0	1	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0004	2258	20	3	1	12	1	3	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0005	2258	6	6	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0006	2257	5	4	1	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0007	2258	5	0	4	0	1	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0008	2258	3	3	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0009	2258	3	0	2	0	1	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0010	2258	3	3	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0011	2258	3	3	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0012	2258	3	3	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0013	2258	3	3	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0014	2258	2	0	2	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0015	2258	2	2	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0016	2258	2	0	0	0	1	1	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0017	2258	2	0	1	0	0	1	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0018	2258	1	0	0	1	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0019	2258	1	0	1	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0020	2258	1	0	0	1	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0021	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0022	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0023	2258	1	0	1	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0024	2258	1	0	0	1	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0025	2258	1	0	0	0	0	1	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0026	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0027	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0028	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0029	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0030	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0031	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0032	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0033	2258	1	0	0	1	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0034	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741