Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BARHL2_chr1_90706539_90722302	0/0	t0007	881	1	0	0	1	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARX1_chr9_93946627_93960355	1/0	t0001	747	218	39	31	116	6	25	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0002	747	91	36	21	19	6	9	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/1	t0003	747	46	8	8	17	2	10	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0004	747	42	8	8	23	1	2	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0005	747	3	0	2	0	1	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0006	747	2	0	2	0	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0007	747	2	0	2	0	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0008	747	1	0	0	1	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0009	747	1	1	0	0	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0010	747	1	0	0	1	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	t0011	747	1	0	0	1	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX2_chr11_129370848_129457279	0/1	t0001	1066	119	31	24	44	8	11	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0002	1067	92	18	9	52	1	12	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0003	1066	56	9	12	32	1	2	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0004	1067	27	0	1	21	0	5	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0005	1066	27	2	3	22	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	1/0	t0006	1066	22	3	8	3	3	4	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0007	1068	13	12	1	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0008	1067	10	5	3	0	1	1	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0009	1068	8	5	2	0	0	1	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0010	1066	4	2	2	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0011	1067	4	0	4	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0012	1068	3	3	0	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0013	1066	2	2	0	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0014	1067	2	0	0	2	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0015	1067	2	0	0	2	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0016	1068	1	1	0	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0017	1067	1	1	0	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0018	1068	1	0	0	0	0	1	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0019	1067	1	0	0	1	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0020	1066	1	0	0	1	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0021	1067	1	0	1	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0022	1067	1	1	0	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0023	1066	1	0	0	0	0	1	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	t0024	1066	1	1	0	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BASP1_chr5_17212631_17281834	0/0	t0001	1124	72	9	16	30	3	14	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/1	t0002	1125	51	4	15	22	4	5	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	1/0	t0003	1124	31	7	3	17	0	3	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0004	1122	15	10	1	4	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0005	1125	15	1	5	7	1	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0006	1126	14	7	1	1	0	5	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0007	1121	14	1	1	8	1	3	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0008	1126	14	1	5	8	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0009	1123	14	0	1	11	1	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0010	1125	12	7	2	1	2	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0011	1124	9	0	2	6	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0012	1122	7	6	0	1	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0013	1121	6	0	5	0	1	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0014	1118	6	5	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834