JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC14L6_chr22_30517799_30551741	0/0	t0035	2257	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0036	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC14L6_chr22_30517799_30551741	0/0	t0037	2258	1	1	0	0	0	0	copy fasta	SEC14L6	chr22	30517799	30551741
SEC16A_chr9_136435105_136488040	1/0	t0001	1945	176	60	31	52	10	22	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/1	t0002	1945	51	4	15	23	3	5	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0003	1945	38	7	14	11	3	3	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0004	1945	10	8	2	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0005	1945	7	6	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0006	1945	7	5	2	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0007	1945	3	2	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0008	1945	3	3	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0009	1945	2	0	1	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0010	1945	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0011	1945	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0012	1945	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0013	1945	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0014	1945	1	0	1	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0015	1945	1	0	0	0	0	1	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0016	1945	1	1	0	0	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0017	1945	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16A_chr9_136435105_136488040	0/0	t0018	1945	1	0	0	1	0	0	copy fasta	SEC16A	chr9	136435105	136488040
SEC16B_chr1_177923788_177975058	1/0	t0001	1304	116	27	23	36	7	22	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0002	1304	102	23	21	44	4	10	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/1	t0003	1304	79	19	15	37	2	5	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0004	1304	74	1	10	58	1	4	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0005	1304	8	7	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0006	1304	7	6	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0007	1304	4	1	3	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0008	1304	4	0	0	4	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0009	1304	2	0	0	2	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0010	1304	2	2	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0011	1304	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0012	1304	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0013	1304	1	0	0	0	0	1	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0014	1304	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0015	1304	1	0	0	1	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0016	1304	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0017	1304	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0018	1304	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0019	1304	1	1	0	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC16B_chr1_177923788_177975058	0/0	t0020	1304	1	0	1	0	0	0	copy fasta	SEC16B	chr1	177923788	177975058
SEC22A_chr3_123196943_123279136	0/0	t0001	2482	168	30	25	84	5	24	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0002	2482	61	1	9	38	6	7	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0003	2495	60	12	14	19	4	11	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/1	t0004	2482	13	7	3	0	1	1	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0005	2482	5	5	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0006	2482	5	5	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0007	2482	5	4	1	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0008	2482	4	4	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	1/0	t0009	2478	3	2	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136