JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC22A_chr3_123196943_123279136	0/0	t0010	2482	2	0	0	0	0	2	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0011	2482	2	2	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0012	2482	2	2	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0013	2482	1	0	0	1	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0014	2495	1	1	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0015	2482	1	1	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0016	2482	1	0	1	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0017	2482	1	0	1	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0018	2482	1	1	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0019	2482	1	0	0	1	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0020	2519	1	1	0	0	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0021	2495	1	0	0	0	0	1	copy fasta	SEC22A	chr3	123196943	123279136
SEC22A_chr3_123196943_123279136	0/0	t0022	2482	1	0	0	1	0	0	copy fasta	SEC22A	chr3	123196943	123279136
SEC22B_chr1_120145898_120181520	1/1	t0001	6280	108	6	17	71	3	9	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0002	6278	32	6	11	4	5	6	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0003	6280	23	4	1	16	1	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0004	6285	18	0	0	11	0	7	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0005	6280	15	14	1	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0006	6280	15	0	6	8	0	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0007	6281	13	0	5	5	0	3	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0008	6286	10	0	0	9	0	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0009	6279	9	0	2	3	2	2	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0010	6279	8	1	2	1	1	3	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0011	6280	7	0	0	7	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0012	6281	6	6	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0013	6281	5	5	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0014	6280	5	5	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0015	6281	5	0	0	5	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0016	6285	4	0	4	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0017	6280	4	4	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0018	6281	4	0	1	3	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0019	6282	4	4	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0020	6281	3	3	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0021	6285	3	0	0	0	0	3	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0022	6280	3	3	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0023	6280	3	0	2	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0024	6286	3	0	0	3	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0025	6281	3	0	0	3	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0026	6280	2	2	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0027	6280	2	0	0	2	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0028	6280	2	2	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0029	6280	2	0	0	1	0	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0030	6280	2	2	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0031	6281	2	0	0	1	0	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0032	6282	2	2	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0033	6287	2	1	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0034	6282	2	2	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0035	6282	2	1	1	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0036	6281	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0037	6281	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520