JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC22B_chr1_120145898_120181520	0/0	t0038	6281	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0039	6279	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0040	6281	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0041	6279	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0042	6281	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0043	6284	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0044	6279	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0045	6279	1	0	0	0	0	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0046	6279	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0047	6279	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0048	6280	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0049	6280	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0050	6285	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0051	6280	1	0	1	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0052	6282	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0053	6285	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0054	6280	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0055	6280	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0056	6280	1	0	1	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0057	6280	1	0	0	0	0	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0058	6283	1	0	0	0	1	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0059	6285	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0060	6280	1	0	0	0	0	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0061	6280	1	0	0	0	1	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0062	6280	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0063	6280	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0064	6280	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0065	6280	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0066	6280	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0067	6280	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0068	6282	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0069	6278	1	0	0	0	0	1	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0070	6278	1	0	1	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0071	6280	1	0	1	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0072	6280	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0073	6281	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0074	6281	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0075	6281	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0076	6281	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0077	6280	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0078	6282	1	0	1	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0079	6282	1	0	0	1	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0080	6280	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0081	6280	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22B_chr1_120145898_120181520	0/0	t0082	6281	1	1	0	0	0	0	copy fasta	SEC22B	chr1	120145898	120181520
SEC22C_chr3_42542969_42586967	1/1	t0001	5429	166	15	41	72	10	26	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0002	5429	100	27	12	49	3	9	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0003	5427	22	1	0	20	0	1	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0004	5430	14	5	1	2	0	6	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0005	5430	12	0	6	5	0	1	copy fasta	SEC22C	chr3	42542969	42586967