JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC22C_chr3_42542969_42586967	0/0	t0006	5430	7	7	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0007	5430	7	5	2	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0008	5429	6	6	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0009	5412	5	5	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0010	5431	4	4	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0011	5427	4	0	0	3	0	1	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0012	5429	3	0	0	3	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0013	5427	3	2	1	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0014	5429	3	0	0	3	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0015	5430	3	3	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0016	5429	2	1	1	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0017	5429	2	0	0	2	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0018	5428	2	0	0	2	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0019	5429	2	2	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0020	5428	2	0	1	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0021	5430	2	0	2	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0022	5430	2	2	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0023	5429	2	2	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0024	5429	1	0	1	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0025	5431	1	1	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0026	5429	1	0	0	0	0	1	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0027	5429	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0028	5429	1	0	0	0	0	1	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0029	5429	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0030	5429	1	0	0	0	1	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0031	5429	1	1	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0032	5429	1	0	1	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0033	5429	1	0	0	0	1	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0034	5428	1	0	0	0	1	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0035	5429	1	0	1	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0036	5428	1	1	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0037	5427	1	1	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0038	5427	1	1	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0039	5430	1	1	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0040	5429	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0041	5429	1	0	0	1	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC22C_chr3_42542969_42586967	0/0	t0042	5414	1	1	0	0	0	0	copy fasta	SEC22C	chr3	42542969	42586967
SEC23A_chr14_39026919_39108235	1/1	t0001	1546	336	72	65	150	16	31	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	t0002	1546	10	8	2	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	t0003	1546	7	7	0	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	t0004	1547	5	1	1	2	0	1	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	t0005	1546	4	4	0	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	t0006	1546	2	2	0	0	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	t0007	1546	1	0	0	1	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23A_chr14_39026919_39108235	0/0	t0008	1546	1	0	0	1	0	0	copy fasta	SEC23A	chr14	39026919	39108235
SEC23B_chr20_18502940_18566415	1/1	t0001	723	257	65	47	113	9	21	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	t0002	724	137	19	29	62	7	20	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	t0003	723	10	2	0	7	0	1	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	t0004	721	5	5	0	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415
SEC23B_chr20_18502940_18566415	0/0	t0005	723	1	1	0	0	0	0	copy fasta	SEC23B	chr20	18502940	18566415