JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC24A_chr5_134643785_134732909	0/0	t0018	3113	1	1	0	0	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	t0019	3113	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24A_chr5_134643785_134732909	0/0	t0020	3109	1	0	0	1	0	0	copy fasta	SEC24A	chr5	134643785	134732909
SEC24B_chr4_109428815_109545896	1/1	t0001	1277	143	48	31	45	3	14	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0002	1275	23	8	3	12	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0003	1277	16	9	2	3	0	2	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0004	1277	14	4	5	0	1	4	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0005	1278	11	0	0	8	0	3	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0006	1273	3	3	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0007	1277	2	2	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0008	1277	2	1	1	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0009	1275	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0010	1277	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0011	1278	1	0	1	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0012	1277	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0013	1277	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0014	1277	1	0	1	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0015	1277	1	0	0	0	0	1	copy fasta	SEC24B	chr4	109428815	109545896
SEC24B_chr4_109428815_109545896	0/0	t0016	1275	1	1	0	0	0	0	copy fasta	SEC24B	chr4	109428815	109545896
SEC24C_chr10_73739372_73777161	1/1	t0001	1161	254	54	34	122	11	31	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	t0002	1161	59	14	6	29	1	9	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	t0003	1161	2	2	0	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	t0004	1161	2	0	2	0	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	t0005	1161	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	t0006	1161	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	t0007	1161	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	t0008	1161	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24C_chr10_73739372_73777161	0/0	t0009	1161	1	0	0	1	0	0	copy fasta	SEC24C	chr10	73739372	73777161
SEC24D_chr4_118717823_118841126	1/1	t0001	920	292	65	58	128	12	27	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	t0002	920	2	0	0	2	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	t0003	920	2	0	0	2	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	t0004	920	1	0	0	1	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	t0005	920	1	0	0	1	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	t0006	920	1	1	0	0	0	0	copy fasta	SEC24D	chr4	118717823	118841126
SEC24D_chr4_118717823_118841126	0/0	t0007	920	1	0	0	0	0	1	copy fasta	SEC24D	chr4	118717823	118841126
SEC31A_chr4_82813509_82896153	1/1	t0001	636	328	82	46	156	8	34	copy fasta	SEC31A	chr4	82813509	82896153
SEC31B_chr10_100481647_100524861	1/1	t0001	1095	202	62	32	78	12	16	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0002	1095	76	5	20	43	2	6	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0003	1095	10	10	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0004	1095	3	3	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0005	1095	2	2	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0006	1095	1	0	1	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0007	1095	1	0	1	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0008	1095	1	0	0	1	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0009	1095	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC31B_chr10_100481647_100524861	0/0	t0010	1095	1	1	0	0	0	0	copy fasta	SEC31B	chr10	100481647	100524861
SEC61A1_chr3_128047437_128076683	1/1	t0001	2138	292	57	56	143	7	27	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0002	2138	62	14	13	17	5	13	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0003	2135	11	8	3	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0004	2138	2	0	0	0	2	0	copy fasta	SEC61A1	chr3	128047437	128076683