JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC61A1_chr3_128047437_128076683	0/0	t0005	2138	2	0	0	2	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0006	2138	2	1	1	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0007	2138	2	2	0	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0008	2135	1	1	0	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0009	2138	1	1	0	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0010	2138	1	0	0	1	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0011	2138	1	0	0	1	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0012	2138	1	1	0	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0013	2138	1	0	0	0	0	1	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0014	2138	1	0	0	0	0	1	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0015	2138	1	0	1	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A1_chr3_128047437_128076683	0/0	t0016	2138	1	1	0	0	0	0	copy fasta	SEC61A1	chr3	128047437	128076683
SEC61A2_chr10_12124677_12170407	1/0	t0001	1065	212	62	41	82	10	16	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/1	t0002	1065	115	12	23	59	1	19	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	t0003	1065	12	0	3	7	1	1	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	t0004	1065	7	0	0	7	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	t0005	1061	6	0	0	6	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	t0006	1065	3	3	0	0	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	t0007	1065	2	2	0	0	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	t0008	1065	1	0	1	0	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	t0009	1065	1	0	0	1	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61A2_chr10_12124677_12170407	0/0	t0010	1065	1	1	0	0	0	0	copy fasta	SEC61A2	chr10	12124677	12170407
SEC61B_chr9_99217282_99235615	1/1	t0001	274	340	88	70	125	16	39	copy fasta	SEC61B	chr9	99217282	99235615
SEC61B_chr9_99217282_99235615	0/0	t0002	274	6	0	0	6	0	0	copy fasta	SEC61B	chr9	99217282	99235615
SEC61B_chr9_99217282_99235615	0/0	t0003	274	2	0	0	0	2	0	copy fasta	SEC61B	chr9	99217282	99235615
SEC61B_chr9_99217282_99235615	0/0	t0004	274	1	0	0	1	0	0	copy fasta	SEC61B	chr9	99217282	99235615
SEC61B_chr9_99217282_99235615	0/0	t0005	274	1	0	0	0	0	1	copy fasta	SEC61B	chr9	99217282	99235615
SEC61G_chr7_54747253_54764211	1/1	t0001	219	405	88	70	181	18	46	copy fasta	SEC61G	chr7	54747253	54764211
SEC61G_chr7_54747253_54764211	0/0	t0002	219	1	0	0	1	0	0	copy fasta	SEC61G	chr7	54747253	54764211
SEC62_chr3_169961807_170003373	1/1	t0001	5327	158	35	31	68	4	18	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0002	5327	55	9	6	27	2	11	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0003	5328	34	0	0	32	0	2	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0004	5329	11	10	1	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0005	5326	11	8	3	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0006	5327	11	0	5	6	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0007	5327	4	0	0	0	0	4	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0008	5327	3	0	0	3	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0009	5327	3	0	0	3	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0010	5327	3	3	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0011	5327	3	3	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0012	5326	3	0	0	0	0	3	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0013	5326	3	3	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0014	5327	2	2	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0015	5327	2	0	0	2	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0016	5326	2	2	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0017	5327	2	2	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0018	5327	2	2	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0019	5328	1	0	0	1	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0020	5327	1	0	0	1	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0021	5326	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373