JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC62_chr3_169961807_170003373	0/0	t0022	5327	1	0	0	1	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0023	5327	1	0	0	0	0	1	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0024	5327	1	0	0	0	0	1	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0025	5327	1	0	1	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0026	5327	1	0	0	1	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0027	5327	1	0	1	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0028	5327	1	0	0	1	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0029	5327	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0030	5329	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0031	5326	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0032	5327	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0033	5327	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0034	5328	1	0	0	1	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0035	5328	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0036	5327	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0037	5327	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0038	5327	1	0	0	1	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0039	5326	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0040	5327	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0041	5327	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC62_chr3_169961807_170003373	0/0	t0042	5327	1	1	0	0	0	0	copy fasta	SEC62	chr3	169961807	170003373
SEC63_chr6_107862756_107963208	0/0	t0001	4140	122	13	39	50	6	14	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0002	4148	30	1	2	27	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0003	4140	23	8	2	7	2	4	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	1/0	t0004	4148	21	0	2	18	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0005	4152	18	1	3	10	1	3	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0006	4140	15	15	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0007	4140	8	5	2	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0008	4142	6	6	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0009	4143	6	6	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0010	4151	6	0	0	6	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0011	4140	5	1	0	4	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0012	4141	4	4	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0013	4149	4	0	0	4	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0014	4145	4	4	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0015	4151	4	4	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0016	4142	3	3	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0017	4144	3	3	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0018	4148	3	0	0	2	0	1	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0019	4143	2	2	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0020	4142	2	2	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0021	4141	2	0	0	2	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0022	4146	2	0	0	2	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0023	4141	2	0	0	2	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0024	4140	2	2	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0025	4149	2	0	0	2	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/1	t0026	4153	2	0	1	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0027	4148	2	2	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0028	4146	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0029	4148	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208