JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEC63_chr6_107862756_107963208	0/0	t0030	4143	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0031	4142	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0032	4149	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0033	4146	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0034	4145	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0035	4141	1	0	1	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0036	4141	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0037	4141	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0038	4140	1	0	1	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0039	4140	1	0	0	0	0	1	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0040	4140	1	0	1	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0041	4141	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0042	4140	1	0	1	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0043	4140	1	0	0	0	1	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0044	4140	1	0	1	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0045	4140	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0046	4141	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0047	4141	1	0	0	0	0	1	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0048	4140	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0049	4141	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0050	4140	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0051	4140	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0052	4140	1	0	0	0	0	1	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0053	4148	1	0	0	0	0	1	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0054	4150	1	1	0	0	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0055	4148	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SEC63_chr6_107862756_107963208	0/0	t0056	4151	1	0	0	1	0	0	copy fasta	SEC63	chr6	107862756	107963208
SECISBP2L_chr15_48983638_49051446	0/0	t0001	3754	144	15	25	88	1	15	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/1	t0002	3755	80	9	18	23	9	20	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0003	3754	45	22	5	11	5	2	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0004	3755	25	0	1	19	1	4	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	1/0	t0005	3754	20	5	2	4	0	8	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0006	3754	10	9	1	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0007	3753	9	8	1	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0008	3755	7	7	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0009	3755	6	0	0	6	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0010	3754	5	4	1	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0011	3755	4	4	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0012	3755	4	4	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0013	3754	2	0	0	2	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0014	3754	2	2	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0015	3754	2	2	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0016	3754	2	0	1	0	0	1	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0017	3754	1	0	0	1	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0018	3754	1	1	0	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0019	3754	1	0	0	1	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0020	3755	1	0	0	1	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0021	3754	1	0	1	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0022	3754	1	0	0	0	1	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0023	3754	1	0	0	1	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446