JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SECISBP2L_chr15_48983638_49051446	0/0	t0024	3755	1	0	1	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0025	3755	1	0	0	1	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0026	3755	1	0	0	0	1	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2L_chr15_48983638_49051446	0/0	t0027	3755	1	0	1	0	0	0	copy fasta	SECISBP2L	chr15	48983638	49051446
SECISBP2_chr9_89313500_89364663	1/1	t0001	917	299	71	68	116	11	31	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0002	916	54	3	1	44	0	6	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0003	917	6	6	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0004	917	6	6	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0005	917	5	1	0	0	1	3	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0006	917	2	0	0	2	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0007	917	2	0	2	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0008	917	1	1	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0009	917	1	0	0	1	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0010	917	1	1	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0011	917	1	1	0	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0012	917	1	0	1	0	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECISBP2_chr9_89313500_89364663	0/0	t0013	917	1	0	0	1	0	0	copy fasta	SECISBP2	chr9	89313500	89364663
SECTM1_chr17_82316024_82338766	1/1	t0001	1257	206	62	36	77	4	25	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0002	1257	107	5	24	58	11	9	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0003	1257	10	2	7	0	0	1	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0004	1257	9	2	3	2	0	2	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0005	1257	7	7	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0006	1257	6	4	2	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0007	1257	4	0	1	0	1	2	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0008	1257	3	3	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0009	1257	2	2	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0010	1257	2	2	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0011	1257	2	0	2	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0012	1257	2	0	1	0	1	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0013	1257	1	1	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0014	1257	1	1	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0015	1257	1	0	1	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0016	1257	1	1	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0017	1257	1	1	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0018	1257	1	1	0	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0019	1257	1	0	0	1	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0020	1257	1	0	1	0	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0021	1257	1	0	0	1	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0022	1257	1	0	0	1	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0023	1257	1	0	0	1	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0024	1257	1	0	0	0	0	1	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0025	1257	1	0	0	0	1	0	copy fasta	SECTM1	chr17	82316024	82338766
SECTM1_chr17_82316024_82338766	0/0	t0026	1257	1	0	0	1	0	0	copy fasta	SECTM1	chr17	82316024	82338766
SEH1L_chr18_12943011_12992531	1/1	t0001	586	343	56	63	161	16	45	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	t0002	586	19	11	1	7	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	t0003	586	14	14	0	0	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	t0004	586	6	6	0	0	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	t0005	586	3	3	0	0	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	t0006	586	2	2	0	0	0	0	copy fasta	SEH1L	chr18	12943011	12992531
SEH1L_chr18_12943011_12992531	0/0	t0007	586	1	0	0	0	0	1	copy fasta	SEH1L	chr18	12943011	12992531