Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BASP1_chr5_17212631_17281834	0/0	t0015	1123	6	1	1	3	1	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0016	1127	6	1	1	3	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0017	1120	5	4	0	0	1	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0018	1124	5	5	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0019	1124	4	2	0	2	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0020	1126	4	3	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0021	1125	4	0	0	4	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0022	1123	4	0	1	2	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0023	1125	4	0	1	3	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0024	1123	3	1	1	0	1	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0025	1122	3	3	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0026	1127	3	0	0	2	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0027	1131	3	3	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0028	1124	3	0	0	3	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0029	1124	3	0	0	3	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0030	1123	2	1	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0031	1118	1	0	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0032	1118	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0033	1117	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0034	1123	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0035	1122	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0036	1120	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0037	1114	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0038	1120	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0039	1155	1	0	0	0	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0040	1124	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0041	1124	1	0	0	0	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0042	1123	1	0	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0043	1122	1	0	0	1	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0044	1125	1	0	0	0	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0045	1126	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0046	1115	1	0	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0047	1128	1	0	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0048	1125	1	0	0	1	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0049	1130	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0050	1130	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0051	1129	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0052	1141	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0053	1140	1	1	0	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0054	1121	1	0	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0055	1124	1	0	0	0	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0056	1126	1	0	0	1	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0057	1124	1	0	0	1	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	t0058	1123	1	0	0	1	0	0	copy fasta	BASP1	chr5	17212631	17281834
BATF2_chr11_64982945_65001971	1/1	t0001	1242	336	72	55	164	15	28	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0002	1242	21	2	4	4	0	11	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0003	1242	15	0	5	8	1	1	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0004	1242	9	9	0	0	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0005	1242	6	4	2	0	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0006	1242	5	0	0	5	0	0	copy fasta	BATF2	chr11	64982945	65001971