JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEL1L2_chr20_13844247_13995614	1/1	t0001	319	219	67	34	87	10	19	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	t0002	319	65	6	8	40	3	8	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	t0003	319	34	0	8	16	3	7	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	t0004	319	3	0	1	2	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	t0005	319	2	1	1	0	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L2_chr20_13844247_13995614	0/0	t0006	319	1	0	0	1	0	0	copy fasta	SEL1L2	chr20	13844247	13995614
SEL1L3_chr4_25742433_25867988	0/0	t0001	1145	123	13	25	74	3	8	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	1/1	t0002	1145	120	43	21	24	6	24	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0003	1153	21	7	1	9	1	3	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0004	1145	8	7	1	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0005	1147	7	4	1	2	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0006	1143	5	5	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0007	1145	4	4	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0008	1155	3	1	2	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0009	1153	3	3	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0010	1145	2	1	1	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0011	1145	2	0	0	0	0	2	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0012	1147	2	2	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0013	1153	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0014	1145	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0015	1147	1	0	0	0	0	1	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0016	1145	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0017	1147	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0018	1145	1	0	1	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0019	1145	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0020	1145	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0021	1145	1	0	0	1	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0022	1153	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0023	1145	1	1	0	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L3_chr4_25742433_25867988	0/0	t0024	1145	1	0	1	0	0	0	copy fasta	SEL1L3	chr4	25742433	25867988
SEL1L_chr14_81466547_81538853	1/0	t0001	5535	149	23	21	82	3	19	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/1	t0002	5535	81	4	22	35	7	12	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0003	5535	31	1	8	21	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0004	5534	14	12	2	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0005	5535	8	8	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0006	5535	6	0	3	0	1	2	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0007	5534	6	2	2	0	0	2	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0008	5534	5	2	0	3	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0009	5536	5	2	2	1	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0010	5535	4	4	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0011	5534	3	3	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0012	5535	3	0	0	3	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0013	5535	3	3	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0014	5535	3	3	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0015	5535	3	0	2	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0016	5535	3	2	1	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0017	5535	2	0	0	2	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0018	5535	2	1	0	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0019	5536	2	0	0	2	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0020	5535	2	2	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853