JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEL1L_chr14_81466547_81538853	0/0	t0021	5535	2	2	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0022	5534	2	2	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0023	5534	2	2	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0024	5534	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0025	5535	1	0	0	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0026	5535	1	0	0	1	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0027	5535	1	0	0	1	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0028	5535	1	0	0	1	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0029	5535	1	0	0	0	0	1	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0030	5535	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0031	5535	1	0	0	0	1	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0032	5535	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0033	5535	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0034	5534	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0035	5534	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0036	5536	1	0	0	1	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0037	5534	1	0	0	1	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0038	5533	1	0	1	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0039	5533	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0040	5534	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0041	5535	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SEL1L_chr14_81466547_81538853	0/0	t0042	5535	1	1	0	0	0	0	copy fasta	SEL1L	chr14	81466547	81538853
SELENBP1_chr1_151359304_151377705	1/1	t0001	304	434	97	84	196	12	43	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	t0002	304	1	0	0	0	0	1	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	t0003	304	1	1	0	0	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	t0004	304	1	0	0	1	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENBP1_chr1_151359304_151377705	0/0	t0005	304	1	0	0	1	0	0	copy fasta	SELENBP1	chr1	151359304	151377705
SELENOF_chr1_86857445_86919126	1/0	t0001	1045	124	30	21	48	3	21	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/1	t0002	1045	71	38	10	8	5	9	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/0	t0003	1045	16	15	1	0	0	0	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/0	t0004	1045	5	4	0	0	0	1	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/0	t0005	1045	5	5	0	0	0	0	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/0	t0006	1045	3	0	0	0	0	3	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/0	t0007	1045	1	1	0	0	0	0	copy fasta	SELENOF	chr1	86857445	86919126
SELENOF_chr1_86857445_86919126	0/0	t0008	1045	1	1	0	0	0	0	copy fasta	SELENOF	chr1	86857445	86919126
SELENOH_chr11_57736491_57748550	1/1	t0001	824	252	68	50	102	8	22	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0002	824	52	6	12	18	6	10	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0003	824	43	0	9	32	0	2	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0004	824	9	9	0	0	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0005	824	6	6	0	0	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0006	824	1	0	0	1	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0007	824	1	0	1	0	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0008	824	1	0	0	1	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0009	824	1	0	0	1	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0010	824	1	1	0	0	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOH_chr11_57736491_57748550	0/0	t0011	824	1	0	0	1	0	0	copy fasta	SELENOH	chr11	57736491	57748550
SELENOI_chr2_26341143_26400885	0/1	t0001	6872	73	7	19	33	5	8	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0002	6872	70	2	17	51	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0003	6872	54	16	22	2	7	7	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0004	6871	26	5	3	18	0	0	copy fasta	SELENOI	chr2	26341143	26400885