JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SELENOI_chr2_26341143_26400885	0/0	t0005	6872	23	19	3	0	0	1	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0006	6872	17	17	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0007	6872	14	0	0	13	0	1	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0008	6868	9	7	2	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0009	6872	6	0	0	6	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0010	6872	6	3	3	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0011	6873	5	4	1	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	1/0	t0012	6873	4	3	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0013	6866	4	2	2	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0014	6871	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0015	6866	1	1	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0016	6872	1	0	0	0	0	1	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0017	6872	1	1	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0018	6872	1	0	0	0	0	1	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0019	6871	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0020	6871	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0021	6872	1	1	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0022	6872	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0023	6872	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0024	6872	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0025	6872	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0026	6872	1	1	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0027	6872	1	1	0	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0028	6872	1	0	1	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0029	6872	1	0	1	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0030	6872	1	0	1	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0031	6872	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0032	6872	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0033	6872	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0034	6872	1	0	0	1	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0035	6872	1	0	0	0	0	1	copy fasta	SELENOI	chr2	26341143	26400885
SELENOI_chr2_26341143_26400885	0/0	t0036	6872	1	0	1	0	0	0	copy fasta	SELENOI	chr2	26341143	26400885
SELENOK_chr3_53879417_53896859	0/0	t0001	1213	165	28	13	107	2	15	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0002	1213	72	12	6	43	2	9	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	1/1	t0003	1213	72	22	28	9	4	7	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0004	1213	62	7	14	35	1	5	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0005	1213	9	9	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0006	1213	5	0	0	5	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0007	1213	5	5	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0008	1213	3	0	1	0	1	1	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0009	1213	3	1	2	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0010	1213	3	0	2	0	0	1	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0011	1213	3	0	0	0	1	2	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0012	1213	2	2	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0013	1213	2	0	2	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0014	1213	2	0	2	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0015	1213	2	1	1	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0016	1213	1	0	0	1	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0017	1213	1	1	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0018	1213	1	0	1	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859