JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SELENOK_chr3_53879417_53896859	0/0	t0019	1213	1	1	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0020	1213	1	0	0	1	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0021	1213	1	1	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0022	1213	1	1	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0023	1213	1	0	0	1	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0024	1213	1	1	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0025	1213	1	0	0	0	1	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0026	1213	1	1	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOK_chr3_53879417_53896859	0/0	t0027	1213	1	1	0	0	0	0	copy fasta	SELENOK	chr3	53879417	53896859
SELENOM_chr22_31099777_31112568	1/1	t0001	257	373	87	76	148	13	47	copy fasta	SELENOM	chr22	31099777	31112568
SELENOM_chr22_31099777_31112568	0/0	t0002	255	5	1	2	0	1	1	copy fasta	SELENOM	chr22	31099777	31112568
SELENON_chr1_25795193_25823221	0/0	t0001	2546	187	31	46	81	8	21	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0002	2546	77	2	11	57	1	6	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	1/0	t0003	2542	35	12	6	7	3	6	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0004	2546	13	0	0	13	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0005	2542	11	10	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0006	2546	8	6	2	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0007	2542	6	5	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0008	2539	5	5	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/1	t0009	2546	5	0	2	0	1	1	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0010	2539	5	5	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0011	2542	3	3	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0012	2546	3	3	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0013	2529	2	1	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0014	2546	2	0	0	2	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0015	2547	2	2	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0016	2546	2	2	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0017	2546	2	0	0	0	0	2	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0018	2542	2	2	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0019	2546	2	2	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0020	2546	2	2	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0021	2539	2	0	1	1	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0022	2539	2	0	0	2	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0023	2539	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0024	2546	1	0	0	1	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0025	2546	1	0	0	1	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0026	2546	1	0	0	0	1	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0027	2539	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0028	2546	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0029	2542	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0030	2546	1	0	1	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0031	2539	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0032	2546	1	0	0	1	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0033	2546	1	0	0	0	0	1	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0034	2547	1	0	0	0	0	1	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0035	2544	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENON_chr1_25795193_25823221	0/0	t0036	2539	1	1	0	0	0	0	copy fasta	SELENON	chr1	25795193	25823221
SELENOO_chr22_50196011_50222616	1/1	t0001	274	390	82	73	167	18	48	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	t0002	274	26	0	0	26	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	t0003	274	10	9	1	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616