JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SELENOO_chr22_50196011_50222616	0/0	t0004	274	9	0	0	9	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOO_chr22_50196011_50222616	0/0	t0005	274	3	3	0	0	0	0	copy fasta	SELENOO	chr22	50196011	50222616
SELENOP_chr5_42794880_42816892	1/0	t0001	911	151	23	25	84	6	12	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	t0002	912	106	9	24	61	6	6	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/1	t0003	911	59	34	13	0	2	9	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	t0004	907	53	16	2	24	0	11	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	t0005	911	12	0	4	7	0	1	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	t0006	911	10	9	1	0	0	0	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	t0007	911	3	0	1	0	2	0	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	t0008	911	1	0	0	0	0	1	copy fasta	SELENOP	chr5	42794880	42816892
SELENOP_chr5_42794880_42816892	0/0	t0009	911	1	1	0	0	0	0	copy fasta	SELENOP	chr5	42794880	42816892
SELENOS_chr15_101267191_101282485	1/1	t0001	649	399	60	74	202	18	43	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0002	649	25	22	3	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0003	649	9	9	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0004	649	3	3	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0005	655	2	2	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0006	649	2	0	0	2	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0007	649	2	2	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0008	649	2	0	1	0	0	1	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0009	655	1	1	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0010	649	1	0	0	1	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0011	649	1	0	0	1	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOS_chr15_101267191_101282485	0/0	t0012	649	1	1	0	0	0	0	copy fasta	SELENOS	chr15	101267191	101282485
SELENOT_chr3_150598321_150635436	0/1	t0001	2850	135	7	26	81	4	16	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0002	2850	120	25	19	64	3	9	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	1/0	t0003	2850	47	23	17	0	2	4	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0004	2850	28	7	10	4	1	6	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0005	2850	6	4	2	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0006	2850	5	5	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0007	2850	5	5	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0008	2850	4	4	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0009	2850	4	4	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0010	2850	3	0	2	0	1	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0011	2850	3	3	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0012	2850	3	3	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0013	2850	2	0	0	0	0	2	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0014	2850	2	0	0	2	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0015	2850	1	0	0	1	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0016	2850	1	1	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0017	2850	1	0	0	1	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0018	2882	1	0	0	0	0	1	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0019	2850	1	0	0	0	0	1	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0020	2850	1	0	0	1	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0021	2850	1	1	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0022	2850	1	0	0	1	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0023	2850	1	0	0	1	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0024	2850	1	0	0	0	0	1	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0025	2850	1	1	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0026	2850	1	1	0	0	0	0	copy fasta	SELENOT	chr3	150598321	150635436
SELENOT_chr3_150598321_150635436	0/0	t0027	2850	1	0	0	0	1	0	copy fasta	SELENOT	chr3	150598321	150635436