JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SELENOV_chr19_39510139_39525675	1/1	t0001	627	417	86	74	199	15	41	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	t0002	627	6	6	0	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	t0003	627	4	0	0	4	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	t0004	633	3	0	2	0	1	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	t0005	627	2	0	1	0	0	1	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	t0006	627	2	1	1	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	t0007	627	1	1	0	0	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOV_chr19_39510139_39525675	0/0	t0008	627	1	0	0	1	0	0	copy fasta	SELENOV	chr19	39510139	39525675
SELENOW_chr19_47773703_47789682	1/1	t0001	495	398	93	70	171	16	46	copy fasta	SELENOW	chr19	47773703	47789682
SELENOW_chr19_47773703_47789682	0/0	t0002	495	4	3	1	0	0	0	copy fasta	SELENOW	chr19	47773703	47789682
SELENOW_chr19_47773703_47789682	0/0	t0003	495	1	0	0	1	0	0	copy fasta	SELENOW	chr19	47773703	47789682
SELENOW_chr19_47773703_47789682	0/0	t0004	495	1	0	1	0	0	0	copy fasta	SELENOW	chr19	47773703	47789682
SELENOW_chr19_47773703_47789682	0/0	t0005	495	1	1	0	0	0	0	copy fasta	SELENOW	chr19	47773703	47789682
SELENOW_chr19_47773703_47789682	0/0	t0006	495	1	1	0	0	0	0	copy fasta	SELENOW	chr19	47773703	47789682
SELE_chr1_169717640_169739079	1/1	t0001	2043	198	38	41	81	9	27	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0002	2043	111	28	6	67	2	8	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0003	2043	91	14	14	54	1	8	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0004	2043	19	2	7	5	2	3	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0005	2043	7	7	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0006	2043	2	0	0	2	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0007	2043	2	0	0	0	0	2	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0008	2043	2	2	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0009	2043	2	0	1	0	1	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0010	2043	1	0	0	1	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0011	2043	1	0	1	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0012	2043	1	1	0	0	0	0	copy fasta	SELE	chr1	169717640	169739079
SELE_chr1_169717640_169739079	0/0	t0013	2043	1	0	0	0	1	0	copy fasta	SELE	chr1	169717640	169739079
SELL_chr1_169685667_169716620	1/1	t0001	1240	215	39	40	112	6	16	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0002	1240	120	16	9	73	5	17	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0003	1240	66	32	16	6	3	9	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0004	1240	18	3	7	3	2	3	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0005	1240	5	5	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0006	1240	2	2	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0007	1240	1	0	0	0	0	1	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0008	1240	1	0	0	0	0	1	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0009	1240	1	0	0	0	0	1	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0010	1240	1	0	0	1	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0011	1240	1	0	0	1	0	0	copy fasta	SELL	chr1	169685667	169716620
SELL_chr1_169685667_169716620	0/0	t0012	1240	1	1	0	0	0	0	copy fasta	SELL	chr1	169685667	169716620
SELPLG_chr12_108616895_108638894	1/0	t0001	1335	321	39	66	159	17	39	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/1	t0002	1334	80	2	14	61	1	1	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0003	1335	35	32	3	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0004	1321	19	18	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0005	1336	9	4	0	5	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0006	1335	7	0	1	0	0	6	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0007	1335	5	0	0	5	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0008	1334	1	0	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0009	1334	1	0	0	1	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0010	1335	1	0	0	0	0	1	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0011	1335	1	0	0	0	0	1	copy fasta	SELPLG	chr12	108616895	108638894