JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SELPLG_chr12_108616895_108638894	0/0	t0012	1321	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0013	1335	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0014	1335	1	0	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0015	1334	1	1	0	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0016	1335	1	0	1	0	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELPLG_chr12_108616895_108638894	0/0	t0017	1335	1	0	0	1	0	0	copy fasta	SELPLG	chr12	108616895	108638894
SELP_chr1_169583849_169635124	1/1	t0001	664	321	86	66	120	10	37	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	t0002	664	3	3	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	t0003	664	1	0	0	0	0	1	copy fasta	SELP	chr1	169583849	169635124
SELP_chr1_169583849_169635124	0/0	t0004	664	1	1	0	0	0	0	copy fasta	SELP	chr1	169583849	169635124
SEM1_chr7_96683762_96714846	0/0	t0001	246	352	88	76	130	18	40	copy fasta	SEM1	chr7	96683762	96714846
SEM1_chr7_96683762_96714846	0/0	t0002	246	2	2	0	0	0	0	copy fasta	SEM1	chr7	96683762	96714846
SEMA3A_chr7_83950777_84199789	0/1	t0001	5799	65	8	12	37	1	6	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0002	5798	37	0	2	32	0	3	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0003	5799	28	0	6	21	0	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0004	5791	22	9	5	1	0	7	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	1/0	t0005	5798	19	1	4	8	2	3	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0006	5798	13	12	1	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0007	5797	12	2	8	0	1	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0008	5798	10	9	1	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0009	5797	10	8	1	1	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0010	5798	8	0	0	8	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0011	5798	7	1	0	5	0	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0012	5798	6	3	2	0	1	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0013	5798	3	3	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0014	5798	3	2	1	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0015	5798	3	3	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0016	5798	3	3	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0017	5791	2	2	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0018	5799	2	0	0	0	1	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0019	5798	2	0	0	2	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0020	5798	2	2	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0021	5798	2	0	2	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0022	5792	1	0	0	0	0	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0023	5791	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0024	5791	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0025	5791	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0026	5799	1	0	0	0	0	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0027	5799	1	0	0	1	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0028	5799	1	0	0	1	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0029	5799	1	0	0	0	0	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0030	5799	1	0	0	1	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0031	5798	1	0	1	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0032	5798	1	0	0	1	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0033	5798	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0034	5798	1	0	0	1	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0035	5798	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0036	5798	1	1	0	0	0	0	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0037	5797	1	0	0	0	0	1	copy fasta	SEMA3A	chr7	83950777	84199789
SEMA3A_chr7_83950777_84199789	0/0	t0038	5798	1	0	0	0	0	1	copy fasta	SEMA3A	chr7	83950777	84199789