JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA3B_chr3_50264147_50282546	1/1	t0001	935	319	54	68	147	16	32	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	t0002	935	37	30	3	0	0	4	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	t0003	935	29	0	0	29	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	t0004	935	2	2	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	t0005	935	1	0	1	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	t0006	935	1	1	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3B_chr3_50264147_50282546	0/0	t0007	935	1	1	0	0	0	0	copy fasta	SEMA3B	chr3	50264147	50282546
SEMA3C_chr7_80737538_80924051	0/1	t0001	2624	177	38	27	84	6	21	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0002	2624	26	2	3	21	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	1/0	t0003	2619	17	16	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0004	2624	8	7	1	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0005	2624	2	2	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0006	2624	2	2	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0007	2624	2	2	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0008	2624	1	0	0	0	0	1	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0009	2619	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0010	2624	1	0	0	1	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0011	2624	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0012	2624	1	0	1	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0013	2624	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0014	2624	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0015	2624	1	0	0	1	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0016	2624	1	1	0	0	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3C_chr7_80737538_80924051	0/0	t0017	2624	1	0	0	1	0	0	copy fasta	SEMA3C	chr7	80737538	80924051
SEMA3D_chr7_84990553_85192056	0/1	t0001	4439	80	18	10	43	0	8	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	1/0	t0002	4439	26	4	10	5	2	4	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0003	4439	21	5	2	14	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0004	4439	18	3	1	12	2	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0005	4438	14	12	2	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0006	4439	13	2	6	3	2	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0007	4439	9	0	0	9	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0008	4439	9	2	2	0	2	3	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0009	4439	8	0	2	3	0	3	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0010	4439	8	1	1	1	1	4	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0011	4439	5	0	1	3	0	1	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0012	4439	5	0	2	0	1	2	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0013	4439	4	2	1	1	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0014	4438	3	3	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0015	4439	3	3	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0016	4439	3	3	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0017	4439	3	3	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0018	4439	2	1	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0019	4439	2	1	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0020	4439	2	0	2	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0021	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0022	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0023	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0024	4439	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0025	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0026	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056