JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA3D_chr7_84990553_85192056	0/0	t0027	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0028	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0029	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0030	4439	1	0	0	1	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0031	4438	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0032	4439	1	0	0	1	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0033	4439	1	0	0	1	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0034	4439	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0035	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0036	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0037	4439	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0038	4439	1	0	0	1	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0039	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0040	4439	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0041	4438	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0042	4438	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0043	4439	1	0	0	0	0	1	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0044	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0045	4439	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0046	4439	1	0	1	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0047	4439	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3D_chr7_84990553_85192056	0/0	t0048	4438	1	1	0	0	0	0	copy fasta	SEMA3D	chr7	84990553	85192056
SEMA3E_chr7_83358238_83654139	0/0	t0001	4931	31	1	4	16	2	8	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0002	4932	12	2	1	8	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0003	4927	9	0	1	6	0	2	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0004	4931	7	3	4	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0005	4931	6	2	2	1	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0006	4949	6	6	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0007	4928	6	0	0	6	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0008	4931	5	0	2	2	1	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0009	4938	5	1	1	0	0	3	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0010	4933	5	0	2	3	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0011	4931	4	0	2	0	0	2	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0012	4927	4	0	2	2	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0013	4950	4	4	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0014	4932	4	0	0	2	0	2	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0015	4951	4	4	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0016	4932	4	0	1	3	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	1/1	t0017	4946	3	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0018	4946	3	3	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0019	4946	3	3	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0020	4933	3	0	2	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0021	4951	3	3	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0022	4946	3	2	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0023	4937	3	3	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0024	4944	2	2	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0025	4931	2	2	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0026	4938	2	2	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0027	4932	2	0	1	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0028	4950	2	2	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139