JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA3E_chr7_83358238_83654139	0/0	t0029	4927	2	2	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0030	4936	2	0	2	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0031	4927	2	1	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0032	4932	2	1	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0033	4931	2	2	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0034	4932	2	0	1	0	1	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0035	4933	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0036	4929	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0037	4936	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0038	4935	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0039	4949	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0040	4930	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0041	4931	1	0	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0042	4929	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0043	4930	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0044	4929	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0045	4931	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0046	4936	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0047	4929	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0048	4933	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0049	4933	1	0	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0050	4930	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0051	4927	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0052	4925	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0053	4927	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0054	4927	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0055	4928	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0056	4937	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0057	4930	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0058	4927	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0059	4926	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0060	4925	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0061	4930	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0062	4949	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0063	4945	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0064	4930	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0065	4928	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0066	4930	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0067	4926	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0068	4945	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0069	4930	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0070	4946	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0071	4930	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0072	4933	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0073	4929	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0074	4926	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0075	4937	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0076	4937	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0077	4936	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0078	4927	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139