Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BATF2_chr11_64982945_65001971	0/0	t0007	1242	2	0	0	2	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0008	1242	2	2	0	0	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0009	1242	2	0	0	2	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0010	1242	1	1	0	0	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0011	1242	1	0	0	1	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0012	1242	1	0	0	0	1	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0013	1242	1	1	0	0	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0014	1242	1	0	0	0	1	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	t0015	1242	1	1	0	0	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF3_chr1_212681417_212704840	1/1	t0001	453	450	90	79	223	16	40	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	t0002	453	5	4	1	0	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	t0003	453	4	0	2	0	2	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	t0004	453	1	0	0	1	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	t0005	453	1	0	0	0	0	1	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	t0006	453	1	0	0	0	0	1	copy fasta	BATF3	chr1	212681417	212704840
BATF_chr14_75517469_75551992	1/1	t0001	536	369	89	74	153	16	35	copy fasta	BATF	chr14	75517469	75551992
BATF_chr14_75517469_75551992	0/0	t0002	536	2	0	0	2	0	0	copy fasta	BATF	chr14	75517469	75551992
BATF_chr14_75517469_75551992	0/0	t0003	536	1	0	0	1	0	0	copy fasta	BATF	chr14	75517469	75551992
BATF_chr14_75517469_75551992	0/0	t0004	536	1	0	0	1	0	0	copy fasta	BATF	chr14	75517469	75551992
BATF_chr14_75517469_75551992	0/0	t0005	536	1	0	0	0	0	1	copy fasta	BATF	chr14	75517469	75551992
BATF_chr14_75517469_75551992	0/0	t0006	536	1	1	0	0	0	0	copy fasta	BATF	chr14	75517469	75551992
BATF_chr14_75517469_75551992	0/0	t0007	536	1	0	0	1	0	0	copy fasta	BATF	chr14	75517469	75551992
BAX_chr19_48949875_48966798	0/1	t0001	217	372	80	66	177	12	36	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	1/0	t0002	217	42	15	12	8	4	2	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	0/0	t0003	217	2	0	0	0	0	2	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	0/0	t0004	217	1	0	0	1	0	0	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	0/0	t0005	217	1	1	0	0	0	0	copy fasta	BAX	chr19	48949875	48966798
BAZ1A_chr14_34747731_34880360	1/1	t0001	1059	157	36	28	66	7	18	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0002	1063	82	10	16	42	5	9	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0003	1056	51	9	1	35	1	5	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0004	1059	41	18	8	4	1	10	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0005	1059	35	2	18	11	2	2	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0006	1055	8	5	3	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0007	1063	1	0	1	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0008	1063	1	1	0	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0009	1059	1	0	0	1	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0010	1059	1	0	1	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0011	1059	1	1	0	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	t0012	1059	1	0	0	1	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1B_chr7_73435406_73527293	1/0	t0001	1664	121	34	32	28	6	20	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/1	t0002	1663	44	17	4	17	1	4	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0003	1663	13	2	4	0	4	3	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0004	1664	4	0	0	4	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0005	1664	4	3	0	0	0	1	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0006	1663	3	2	1	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0007	1663	2	0	0	2	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0008	1664	2	0	0	2	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0009	1664	1	0	0	0	1	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0010	1663	1	0	1	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0011	1663	1	0	0	1	0	0	copy fasta	BAZ1B	chr7	73435406	73527293