JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA3E_chr7_83358238_83654139	0/0	t0079	4932	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0080	4932	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0081	4931	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0082	4930	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0083	4931	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0084	4932	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0085	4931	1	0	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0086	4953	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0087	4953	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0088	4936	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0089	4931	1	0	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0090	4929	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0091	4928	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0092	4932	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0093	4935	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0094	4929	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0095	4931	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0096	4927	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0097	4947	1	1	0	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0098	4947	1	0	1	0	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0099	4937	1	0	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0100	4939	1	0	0	0	0	1	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3E_chr7_83358238_83654139	0/0	t0101	4931	1	0	0	1	0	0	copy fasta	SEMA3E	chr7	83358238	83654139
SEMA3F_chr3_50150324_50194075	0/0	t0001	1252	96	14	13	48	5	16	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0002	1254	54	6	7	39	0	2	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/1	t0003	1250	52	10	9	23	4	5	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0004	1256	43	1	15	23	2	2	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0005	1250	25	9	10	0	2	4	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0006	1252	22	20	2	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	1/0	t0007	1250	9	8	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0008	1250	9	7	1	1	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0009	1252	9	2	6	0	0	1	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0010	1252	4	3	0	0	0	1	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0011	1250	4	4	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0012	1258	3	0	0	3	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0013	1250	2	0	2	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0014	1260	1	0	1	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0015	1250	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0016	1250	1	0	0	0	0	1	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0017	1250	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0018	1252	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0019	1256	1	0	0	0	1	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0020	1250	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0021	1250	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0022	1250	1	1	0	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0023	1250	1	0	0	1	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0024	1252	1	0	1	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3F_chr3_50150324_50194075	0/0	t0025	1254	1	0	1	0	0	0	copy fasta	SEMA3F	chr3	50150324	50194075
SEMA3G_chr3_52428035_52450103	0/0	t0001	2645	143	59	30	40	2	12	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/1	t0002	2645	95	16	23	36	5	14	copy fasta	SEMA3G	chr3	52428035	52450103