JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA3G_chr3_52428035_52450103	0/0	t0003	2645	20	1	6	13	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	1/0	t0004	2645	11	0	4	5	0	1	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0005	2645	11	0	8	3	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0006	2645	6	0	3	0	2	1	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0007	2645	4	3	1	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0008	2645	4	4	0	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0009	2645	3	0	3	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0010	2645	2	0	0	0	2	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0011	2645	2	2	0	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0012	2645	2	0	0	0	0	2	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0013	2645	1	0	0	0	1	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0014	2645	1	0	0	1	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0015	2343	1	0	0	1	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0016	2645	1	0	0	1	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0017	2645	1	0	0	0	0	1	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0018	2645	1	1	0	0	0	0	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA3G_chr3_52428035_52450103	0/0	t0019	2645	1	0	0	0	0	1	copy fasta	SEMA3G	chr3	52428035	52450103
SEMA4A_chr1_156148585_156182744	1/1	t0001	957	246	48	50	111	7	28	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	t0002	957	82	28	22	12	11	9	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	t0003	957	40	12	6	17	0	5	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	t0004	957	2	0	0	2	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	t0005	957	1	0	0	1	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	t0006	957	1	0	0	1	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	t0007	957	1	1	0	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4A_chr1_156148585_156182744	0/0	t0008	957	1	1	0	0	0	0	copy fasta	SEMA4A	chr1	156148585	156182744
SEMA4B_chr15_90196330_90234660	0/0	t0001	1267	139	7	33	77	3	19	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	1/1	t0002	1267	73	3	9	45	6	8	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0003	1267	61	11	13	21	4	12	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0004	1267	52	5	4	39	0	4	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0005	1267	44	25	14	0	2	3	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0006	1267	9	9	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0007	1267	8	8	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0008	1267	6	0	0	6	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0009	1267	5	5	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0010	1267	3	3	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0011	1267	3	0	0	3	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0012	1267	2	2	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0013	1267	2	2	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0014	1267	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0015	1267	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0016	1267	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0017	1267	1	0	1	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0018	1267	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0019	1267	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0020	1267	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0021	1267	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0022	1267	1	1	0	0	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0023	1267	1	0	0	1	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0024	1267	1	0	0	0	1	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4B_chr15_90196330_90234660	0/0	t0025	1267	1	0	0	1	0	0	copy fasta	SEMA4B	chr15	90196330	90234660