JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA4B_chr15_90196330_90234660	0/0	t0026	1267	1	0	0	1	0	0	copy fasta	SEMA4B	chr15	90196330	90234660
SEMA4C_chr2_96854718_96875080	1/1	t0001	1151	331	92	64	135	4	34	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0002	1151	9	0	0	9	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0003	1151	1	0	0	0	0	1	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0004	1151	1	1	0	0	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0005	1151	1	0	0	1	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0006	1151	1	1	0	0	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0007	1151	1	0	0	0	0	1	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0008	1151	1	1	0	0	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0009	1151	1	0	0	1	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0010	1151	1	1	0	0	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0011	1151	1	0	0	1	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4C_chr2_96854718_96875080	0/0	t0012	1151	1	0	0	1	0	0	copy fasta	SEMA4C	chr2	96854718	96875080
SEMA4D_chr9_89372235_89503113	0/1	t0001	1974	120	28	35	38	4	14	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0002	1974	54	4	4	36	4	6	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0003	1974	31	13	11	0	0	7	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0004	1973	31	8	2	19	0	2	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0005	1973	14	7	3	4	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0006	1974	12	5	1	0	3	3	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0007	1973	12	0	1	7	0	4	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0008	1973	7	0	1	6	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0009	1973	7	0	5	2	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0010	1974	6	4	2	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0011	1974	6	6	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0012	1975	6	0	0	6	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0013	1974	5	2	2	0	0	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0014	1973	5	3	0	2	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0015	1974	4	1	2	0	0	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0016	1975	4	0	1	3	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0017	1974	3	0	0	3	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0018	1973	3	2	1	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0019	1973	3	0	3	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0020	1974	2	0	0	2	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	1/0	t0021	1974	2	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0022	1973	2	0	0	2	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0023	1973	2	0	0	2	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0024	1975	2	2	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0025	1972	2	0	1	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0026	1973	2	0	0	2	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0027	1973	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0028	1973	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0029	1974	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0030	1974	1	0	0	0	0	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0031	1974	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0032	1974	1	0	0	0	0	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0033	1972	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0034	1974	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0035	1973	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0036	1974	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0037	1974	1	0	0	0	1	0	copy fasta	SEMA4D	chr9	89372235	89503113