JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA4D_chr9_89372235_89503113	0/0	t0038	1973	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0039	1973	1	0	0	0	0	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0040	1974	1	0	0	0	1	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0041	1974	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0042	1973	1	0	0	0	1	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0043	1973	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0044	1974	1	0	1	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0045	1974	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0046	1974	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0047	1974	1	0	0	1	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0048	1973	1	1	0	0	0	0	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4D_chr9_89372235_89503113	0/0	t0049	1973	1	0	0	0	0	1	copy fasta	SEMA4D	chr9	89372235	89503113
SEMA4F_chr2_74649247_74688841	0/0	t0001	3763	131	13	13	96	1	8	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	1/1	t0002	3763	84	13	30	27	3	9	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0003	3764	15	15	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0004	3763	11	9	1	0	0	1	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0005	3763	9	6	2	0	0	1	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0006	3763	9	7	2	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0007	3763	9	7	2	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0008	3762	5	4	1	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0009	3762	4	4	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0010	3763	3	3	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0011	3763	3	3	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0012	3763	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0013	3763	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0014	3763	1	0	1	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0015	3764	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0016	3763	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0017	3762	1	0	0	0	0	1	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0018	3763	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0019	3762	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0020	3764	1	0	0	1	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0021	3763	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0022	3763	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0023	3763	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4F_chr2_74649247_74688841	0/0	t0024	3763	1	1	0	0	0	0	copy fasta	SEMA4F	chr2	74649247	74688841
SEMA4G_chr10_100964504_100990616	1/1	t0001	1958	127	20	22	71	3	9	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0002	1958	126	34	13	66	3	10	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0003	1958	66	10	26	9	6	15	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0004	1958	19	4	5	1	3	6	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0005	1958	15	14	1	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0006	1954	3	0	2	0	1	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0007	1958	2	2	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0008	1958	2	0	2	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0009	1958	2	1	0	1	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0010	1958	1	0	0	1	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0011	1958	1	0	1	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0012	1958	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0013	1958	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0014	1958	1	0	0	0	0	1	copy fasta	SEMA4G	chr10	100964504	100990616