JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA4G_chr10_100964504_100990616	0/0	t0015	1958	1	0	0	0	0	1	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0016	1958	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0017	1958	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0018	1958	1	1	0	0	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA4G_chr10_100964504_100990616	0/0	t0019	1958	1	0	0	1	0	0	copy fasta	SEMA4G	chr10	100964504	100990616
SEMA5A_chr5_9030033_9551075	0/1	t0001	8528	23	5	1	10	3	3	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0002	8528	8	5	0	3	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0003	8528	3	3	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0004	8532	3	1	0	0	0	2	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0005	8529	3	0	0	3	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0006	8529	3	0	1	0	0	2	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0007	8528	3	2	0	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0008	8532	3	3	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0009	8530	2	0	1	0	1	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0010	8532	2	0	1	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0011	8533	2	1	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0012	8531	2	2	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0013	8528	2	2	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0014	8531	2	0	2	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0015	8530	2	0	0	0	2	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0016	8533	2	2	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0017	8526	2	0	2	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0018	8524	2	2	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0019	8529	2	2	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0020	8529	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0021	8528	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0022	8530	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0023	8531	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0024	8528	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0025	8533	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	1/0	t0026	8531	1	0	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0027	8531	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0028	8528	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0029	8522	1	0	0	0	1	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0030	8531	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0031	8531	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0032	8534	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0033	8527	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0034	8527	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0035	8535	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0036	8529	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0037	8530	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0038	8538	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0039	8529	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0040	8531	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0041	8532	1	0	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0042	8523	1	0	0	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0043	8524	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0044	8533	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0045	8528	1	0	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075